/display_applications/ucsc/maf_customtrack.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 15 lines · 11 code · 0 blank · 4 comment · 0 complexity · b4c1fcc15783d0b82dfd6bce5713663e MD5 · raw file
- <display id="ucsc_maf_customtrack" version="1.0.0" name="display at UCSC" inherit="True">
- <!-- Load links from file: one line to one link -->
- <dynamic_links from_file="tool-data/shared/ucsc/ucsc_build_sites.txt" skip_startswith="#" id="0" name="0">
- <!-- Define parameters by column from file, allow splitting on builds -->
- <dynamic_param name="site_id" value="0"/>
- <dynamic_param name="ucsc_link" value="1"/>
- <dynamic_param name="builds" value="2" split="True" separator="," />
- <!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
- <filter>${site_id in $APP.config.ucsc_display_sites}</filter>
- <filter>${dataset.dbkey in $builds}</filter>
- <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
- <url>${ucsc_link}db=${qp($maf_customtrack_file.dbkey)}&position=${maf_customtrack_file.metadata.vp_chromosome}:${maf_customtrack_file.metadata.vp_start}-${maf_customtrack_file.metadata.vp_end}&hgt.customText=${maf_customtrack_file.qp}</url>
- <param type="data" name="maf_customtrack_file" url="galaxy_${DATASET_HASH}.maf" format="mafcustomtrack"/>
- </dynamic_links>
- </display>