/lib/galaxy/datatypes/tracks.py
https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 39 lines · 10 code · 5 blank · 24 comment · 0 complexity · 70b0ec2e0dcc42c1f9bbab05197422fb MD5 · raw file
- """
- Datatype classes for tracks/track views within galaxy.
- """
- import binary, binascii, logging
- from galaxy import util
- from galaxy.web import url_for
- from galaxy.util.hash_util import hmac_new
- from urllib import quote_plus
- log = logging.getLogger(__name__)
- # GeneTrack is no longer supported but leaving the datatype since
- # files of this type may still exist
- class GeneTrack( binary.Binary ):
- file_ext = "genetrack"
- def __init__(self, **kwargs):
- super( GeneTrack, self ).__init__( **kwargs )
- # self.add_display_app( 'genetrack', 'View in', '', 'genetrack_link' )
- # def get_display_links( self, dataset, type, app, base_url, target_frame='galaxy_main', **kwd ): #Force target_frame to be 'galaxy_main'
- # return binary.Binary.get_display_links( self, dataset, type, app, base_url, target_frame=target_frame, **kwd )
- # def genetrack_link( self, hda, type, app, base_url ):
- # ret_val = []
- # if hda.dataset.has_data():
- # # Get the disk file name and data id
- # file_name = hda.dataset.get_file_name()
- # data_id = quote_plus( str( hda.id ) )
- # galaxy_url = quote_plus( "%s%s" % ( base_url, url_for( controller = 'tool_runner', tool_id='predict2genetrack' ) ) )
- # # Make it secure
- # hashkey = quote_plus( hmac_new( app.config.tool_secret, file_name ) )
- # encoded = quote_plus( binascii.hexlify( file_name ) )
- # for name, url in util.get_genetrack_sites():
- # if name.lower() in app.config.genetrack_display_sites:
- # # send both parameters filename and hashkey
- # link = "%s?filename=%s&hashkey=%s&input=%s&GALAXY_URL=%s" % ( url, encoded, hashkey, data_id, galaxy_url )
- # ret_val.append( ( name, link ) )
- # return ret_val