/lib/galaxy/datatypes/converters/fasta_to_2bit.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 16 lines · 14 code · 0 blank · 2 comment · 0 complexity · c15c31b942f32c4d56e43c0515e3d639 MD5 · raw file 

    

  1. <tool id="CONVERTER_fasta_to_2bit" name="Convert FASTA to 2bit" version="1.0.0">
    2. 

  2.     <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
    3. 

  3.     <!-- Used on the metadata edit page. -->
    4. 

  4.     <requirements>
    5. 

  5.         <requirement type="package">ucsc_tools</requirement>
    6. 

  6.     </requirements>
    7. 

  7.     <command>faToTwoBit $input $output</command>
    8. 

  8.     <inputs>
    9. 

  9.         <param name="input" type="data" format="fasta" label="Fasta file"/>
    10. 

  10.     </inputs>
    11. 

  11.     <outputs>
    12. 

  12.         <data name="output" format="twobit"/>
    13. 

  13.     </outputs>
    14. 

  14.     <help>
    15. 

  15.     </help>
    16. 

  16. </tool>
    17.