/lib/galaxy/datatypes/converters/bed_to_genetrack_converter.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 17 lines · 13 code · 0 blank · 4 comment · 0 complexity · 5be08b625900b71b2dcfb68e9a557fbf MD5 · raw file 

    

  1. <tool id="CONVERTER_bed_to_genetrack_0" name="Convert BED to GeneTrack Index" version="1.0.1">
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  2. <!-- FIXME: THIS IS ALMOST 1:1 COPY OF THE SAME FUNCTIONED TOOL - ALLOW REGULAR TOOLS TO MASCARADE AS CONVERTERS 
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  3. Using a shift of 0, but tool allows specifying...
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  4. -->
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  5. <!--  <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
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  6.   <command interpreter="python">bed_to_genetrack_converter.py -i $input1 -o $output1 -s 0 -v 0 -f BED -x</command>
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  7.   <inputs>
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  8.     <page>
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  9.         <param format="bed6" name="input1" type="data" label="Choose BED file"/>
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  10.     </page>
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  11.    </inputs>
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  12.   <outputs>
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  13.     <data format="genetrack" name="output1"/>
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  14.   </outputs>
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  15.   <help>
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  16.   </help>
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  17. </tool>
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