/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 15 lines · 13 code · 0 blank · 2 comment · 0 complexity · 6dded9809a1712d7428ec2027f0d853e MD5 · raw file 

    

  1. <tool id="CONVERTER_interval_to_bed12_0" name="Convert Genomic Intervals To Strict BED12">
    2. 

  2.   <!--  <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
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  3.   <!-- Used on the metadata edit page. -->
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  4.   <command interpreter="python">interval_to_bedstrict_converter.py $output1 $input1 ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} ${input1.metadata.strandCol} ${input1.metadata.nameCol} ${input1.extension} 12</command>
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  5.   <inputs>
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  6.     <page>
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  7.       <param format="interval" name="input1" type="data" label="Choose intervals"/>
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  8.     </page>
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  9.    </inputs>
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  10.   <outputs>
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  11.     <data format="bed12" name="output1"/>
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  12.   </outputs>
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  13.   <help>
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  14.   </help>
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  15. </tool>
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