/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 17 lines · 16 code · 0 blank · 1 comment · 0 complexity · 10d00cc3a886aa5957144c22977f47b7 MD5 · raw file 

    

  1. <tool id="CONVERTER_wig_to_bigwig" name="Convert Wiggle to BigWig" hidden="true">
    2. 

  2.   <!-- Used internally to generate track indexes -->
    3. 

  3.   <requirements>
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  4.       <requirement type="package">ucsc_tools</requirement>
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  5.   </requirements>
    6. 

  6.   <command>grep -v "^track" $input | wigToBigWig -clip stdin $chromInfo $output</command>
    7. 

  7.   <inputs>
    8. 

  8.     <page>
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  9.       <param format="wig" name="input" type="data" label="Choose wiggle"/>
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  10.     </page>
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  11.    </inputs>
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  12.    <outputs>
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  13.       <data format="bigwig" name="output"/>
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  14.    </outputs>
    15. 

  15.   <help>
    16. 

  16.   </help>
    17. 

  17. </tool>
    18.