/lib/galaxy/datatypes/converters/gff_to_tabix_converter.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 15 lines · 14 code · 0 blank · 1 comment · 0 complexity · 868db7d342541365e8983f40d4403aa0 MD5 · raw file 

    

  1. <tool id="CONVERTER_gff_to_tabix_0" name="Convert GFF to tabix" version="1.0.0" hidden="true">
    2. 

  2. <!--  <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
    3. 

  3.   <command interpreter="python">interval_to_tabix_converter.py -P gff $input1 $bgzip $output1</command>
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  4.   <inputs>
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  5.     <page>
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  6.         <param format="gff" name="input1" type="data" label="Choose GFF file"/>
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  7.         <param format="bgzip" name="bgzip" type="data" label="BGZIP file"/>
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  8.     </page>
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  9.    </inputs>
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  10.   <outputs>
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  11.     <data format="tabix" name="output1"/>
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  12.   </outputs>
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  13.   <help>
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  14.   </help>
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  15. </tool>
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