/lib/galaxy/datatypes/converters/interval_to_coverage.xml
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- <tool id="CONVERTER_interval_to_coverage_0" name="Convert Genomic Intervals To COVERAGE">
- <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
- <!-- Used on the metadata edit page. -->
- <command interpreter="python">interval_to_coverage.py $input1 $output1
- -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol}
- -2 ${output1.metadata.chromCol},${output1.metadata.positionCol},${output1.metadata.forwardCol},${output1.metadata.reverseCol}
- </command>
- <inputs>
- <page>
- <param format="interval" name="input1" type="data" label="Choose intervals"/>
- </page>
- </inputs>
- <outputs>
- <data format="coverage" name="output1"/>
- </outputs>
- <help>
- </help>
- </tool>