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/lib/galaxy/datatypes/converters/interval_to_coverage.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 18 lines | 16 code | 0 blank | 2 comment | 0 complexity | f84a330af8e82cf51341dbf992c37fe8 MD5 | raw file
 1<tool id="CONVERTER_interval_to_coverage_0" name="Convert Genomic Intervals To COVERAGE">
 2  <!--  <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
 3  <!-- Used on the metadata edit page. -->
 4  <command interpreter="python">interval_to_coverage.py $input1 $output1 
 5  -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol}
 6  -2 ${output1.metadata.chromCol},${output1.metadata.positionCol},${output1.metadata.forwardCol},${output1.metadata.reverseCol}
 7  </command>
 8  <inputs>
 9    <page>
10      <param format="interval" name="input1" type="data" label="Choose intervals"/>
11    </page>
12   </inputs>
13  <outputs>
14    <data format="coverage" name="output1"/>
15  </outputs>
16  <help>
17  </help>
18</tool>