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/lib/galaxy/datatypes/converters/interval_to_coverage.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 18 lines | 16 code | 0 blank | 2 comment | 0 complexity | f84a330af8e82cf51341dbf992c37fe8 MD5 | raw file
  1. <tool id="CONVERTER_interval_to_coverage_0" name="Convert Genomic Intervals To COVERAGE">
  2. <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
  3. <!-- Used on the metadata edit page. -->
  4. <command interpreter="python">interval_to_coverage.py $input1 $output1
  5. -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol}
  6. -2 ${output1.metadata.chromCol},${output1.metadata.positionCol},${output1.metadata.forwardCol},${output1.metadata.reverseCol}
  7. </command>
  8. <inputs>
  9. <page>
  10. <param format="interval" name="input1" type="data" label="Choose intervals"/>
  11. </page>
  12. </inputs>
  13. <outputs>
  14. <data format="coverage" name="output1"/>
  15. </outputs>
  16. <help>
  17. </help>
  18. </tool>