/lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 15 lines · 14 code · 0 blank · 1 comment · 0 complexity · d231a7e210c770ddb0857b8b309220ed MD5 · raw file 

    

  1. <tool id="CONVERTER_bam_to_summary_tree_0" name="Convert BAM to Summary Tree" version="1.0.0" hidden="true">
    2. 

  2. <!--  <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
    3. 

  3.   <command interpreter="python">bam_to_summary_tree_converter.py $input1 $bai $output1</command>
    4. 

  4.   <inputs>
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  5.     <page>
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  6.         <param format="bam" name="input1" type="data" label="Choose BAM file"/>
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  7.         <param format="bai" name="bai" type="data" label="BAI index file"/>
    8. 

  8.     </page>
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  9.    </inputs>
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  10.   <outputs>
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  11.     <data format="summary_tree" name="output1"/>
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  12.   </outputs>
    13. 

  13.   <help>
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  14.   </help>
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  15. </tool>
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