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/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 15 lines | 13 code | 0 blank | 2 comment | 0 complexity | 13fcc6d69f0262c81a3936dd27a7865e MD5 | raw file
  1. <tool id="CONVERTER_interval_to_bedstrict_0" name="Convert Genomic Intervals To Strict BED">
  2. <!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
  3. <!-- Used on the metadata edit page. -->
  4. <command interpreter="python">interval_to_bedstrict_converter.py $output1 $input1 ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} ${input1.metadata.strandCol} ${input1.metadata.nameCol} ${input1.extension}</command>
  5. <inputs>
  6. <page>
  7. <param format="interval" name="input1" type="data" label="Choose intervals"/>
  8. </page>
  9. </inputs>
  10. <outputs>
  11. <data format="bedstrict" name="output1"/>
  12. </outputs>
  13. <help>
  14. </help>
  15. </tool>