/lib/galaxy/model/migrate/versions/0025_user_info.py

https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 63 lines · 53 code · 3 blank · 7 comment · 12 complexity · 9b508a5536a100581df260194550655f MD5 · raw file

  1. """
  2. This script adds a foreign key to the form_values table in the galaxy_user table
  3. """
  4. from sqlalchemy import *
  5. from sqlalchemy.orm import *
  6. from migrate import *
  7. from migrate.changeset import *
  8. import datetime
  9. now = datetime.datetime.utcnow
  10. import sys, logging
  11. # Need our custom types, but don't import anything else from model
  12. from galaxy.model.custom_types import *
  13. log = logging.getLogger( __name__ )
  14. log.setLevel(logging.DEBUG)
  15. handler = logging.StreamHandler( sys.stdout )
  16. format = "%(name)s %(levelname)s %(asctime)s %(message)s"
  17. formatter = logging.Formatter( format )
  18. handler.setFormatter( formatter )
  19. log.addHandler( handler )
  20. metadata = MetaData()
  21. def display_migration_details():
  22. print "========================================"
  23. print "This script adds a foreign key to the form_values table in the galaxy_user table"
  24. print "========================================"
  25. def upgrade(migrate_engine):
  26. metadata.bind = migrate_engine
  27. display_migration_details()
  28. # Load existing tables
  29. metadata.reflect()
  30. try:
  31. User_table = Table( "galaxy_user", metadata, autoload=True )
  32. except NoSuchTableError:
  33. User_table = None
  34. log.debug( "Failed loading table galaxy_user" )
  35. if User_table is not None:
  36. try:
  37. col = Column( "form_values_id", Integer, index=True )
  38. col.create( User_table, index_name='ix_user_form_values_id')
  39. assert col is User_table.c.form_values_id
  40. except Exception, e:
  41. log.debug( "Adding column 'form_values_id' to galaxy_user table failed: %s" % ( str( e ) ) )
  42. try:
  43. FormValues_table = Table( "form_values", metadata, autoload=True )
  44. except NoSuchTableError:
  45. FormValues_table = None
  46. log.debug( "Failed loading table form_values" )
  47. if migrate_engine.name != 'sqlite':
  48. # Add 1 foreign key constraint to the form_values table
  49. if User_table is not None and FormValues_table is not None:
  50. try:
  51. cons = ForeignKeyConstraint( [User_table.c.form_values_id],
  52. [FormValues_table.c.id],
  53. name='user_form_values_id_fk' )
  54. # Create the constraint
  55. cons.create()
  56. except Exception, e:
  57. log.debug( "Adding foreign key constraint 'user_form_values_id_fk' to table 'galaxy_user' failed: %s" % ( str( e ) ) )
  58. def downgrade(migrate_engine):
  59. metadata.bind = migrate_engine
  60. pass