/lib/galaxy/model/migrate/versions/0025_user_info.py
https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 63 lines · 53 code · 3 blank · 7 comment · 12 complexity · 9b508a5536a100581df260194550655f MD5 · raw file
- """
- This script adds a foreign key to the form_values table in the galaxy_user table
- """
- from sqlalchemy import *
- from sqlalchemy.orm import *
- from migrate import *
- from migrate.changeset import *
- import datetime
- now = datetime.datetime.utcnow
- import sys, logging
- # Need our custom types, but don't import anything else from model
- from galaxy.model.custom_types import *
- log = logging.getLogger( __name__ )
- log.setLevel(logging.DEBUG)
- handler = logging.StreamHandler( sys.stdout )
- format = "%(name)s %(levelname)s %(asctime)s %(message)s"
- formatter = logging.Formatter( format )
- handler.setFormatter( formatter )
- log.addHandler( handler )
- metadata = MetaData()
- def display_migration_details():
- print "========================================"
- print "This script adds a foreign key to the form_values table in the galaxy_user table"
- print "========================================"
- def upgrade(migrate_engine):
- metadata.bind = migrate_engine
- display_migration_details()
- # Load existing tables
- metadata.reflect()
- try:
- User_table = Table( "galaxy_user", metadata, autoload=True )
- except NoSuchTableError:
- User_table = None
- log.debug( "Failed loading table galaxy_user" )
- if User_table is not None:
- try:
- col = Column( "form_values_id", Integer, index=True )
- col.create( User_table, index_name='ix_user_form_values_id')
- assert col is User_table.c.form_values_id
- except Exception, e:
- log.debug( "Adding column 'form_values_id' to galaxy_user table failed: %s" % ( str( e ) ) )
- try:
- FormValues_table = Table( "form_values", metadata, autoload=True )
- except NoSuchTableError:
- FormValues_table = None
- log.debug( "Failed loading table form_values" )
- if migrate_engine.name != 'sqlite':
- # Add 1 foreign key constraint to the form_values table
- if User_table is not None and FormValues_table is not None:
- try:
- cons = ForeignKeyConstraint( [User_table.c.form_values_id],
- [FormValues_table.c.id],
- name='user_form_values_id_fk' )
- # Create the constraint
- cons.create()
- except Exception, e:
- log.debug( "Adding foreign key constraint 'user_form_values_id_fk' to table 'galaxy_user' failed: %s" % ( str( e ) ) )
- def downgrade(migrate_engine):
- metadata.bind = migrate_engine
- pass