/lib/galaxy/model/migrate/versions/0073_add_ldda_to_implicit_conversion_table.py
https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 40 lines · 38 code · 1 blank · 1 comment · 3 complexity · 2f2a1f9317e6baf28b2fd29bb0d80d1b MD5 · raw file
- """
- Migration script to add 'ldda_parent_id' column to the implicitly_converted_dataset_association table.
- """
- from sqlalchemy import *
- from sqlalchemy.orm import *
- from migrate import *
- from migrate.changeset import *
- import logging
- log = logging.getLogger( __name__ )
- metadata = MetaData()
- def upgrade(migrate_engine):
- metadata.bind = migrate_engine
- print __doc__
- metadata.reflect()
- try:
- Implicitly_converted_table = Table( "implicitly_converted_dataset_association", metadata, autoload=True )
- if migrate_engine.name != 'sqlite':
- c = Column( "ldda_parent_id", Integer, ForeignKey( "library_dataset_dataset_association.id" ), index=True, nullable=True )
- else:
- #Can't use the ForeignKey in sqlite.
- c = Column( "ldda_parent_id", Integer, index=True, nullable=True )
- c.create( Implicitly_converted_table, index_name="ix_implicitly_converted_dataset_assoc_ldda_parent_id")
- assert c is Implicitly_converted_table.c.ldda_parent_id
- except Exception, e:
- print "Adding ldda_parent_id column to implicitly_converted_dataset_association table failed: %s" % str( e )
- log.debug( "Adding ldda_parent_id column to implicitly_converted_dataset_association table failed: %s" % str( e ) )
- def downgrade(migrate_engine):
- metadata.bind = migrate_engine
- metadata.reflect()
- try:
- Implicitly_converted_table = Table( "implicitly_converted_dataset_association", metadata, autoload=True )
- Implicitly_converted_table.c.ldda_parent_id.drop()
- except Exception, e:
- print "Dropping ldda_parent_id column from implicitly_converted_dataset_association table failed: %s" % str( e )
- log.debug( "Dropping ldda_parent_id column from implicitly_converted_dataset_association table failed: %s" % str( e ) )