/tool-data/twobit.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 26 lines · 26 code · 0 blank · 0 comment · 0 complexity · ebe1499d76ebea5c77ab6e79726ed7d7 MD5 · raw file 

    

  1. #This is a sample file distributed with Galaxy that is used by some
    2. 

  2. #tools.  The twobit.loc file has this format (white space characters 
    3. 

  3. #are TAB characters):
    4. 

  4. #
    5. 

  5. #<Build>	<FullPathToFile>
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  6. #
    7. 

  7. #So, for example, if you had droPer1 twobit files stored in 
    8. 

  8. #/depot/data2/galaxy/droPer1/, then the twobit.loc entry 
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  9. #would look like this:
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  10. #
    11. 

  11. #droPer1	/depot/data2/galaxy/droPer1/droPer1.2bit
    12. 

  12. #
    13. 

  13. #and your /depot/data2/galaxy/droPer1/ directory would 
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  14. #contain all of your twobit files (e.g.):
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  15. #
    16. 

  16. #-rw-rw-r--   1 nate   galaxy 48972650 2007-05-04 11:27 droPer1.2bit
    17. 

  17. #...etc...
    18. 

  18. #
    19. 

  19. #Your twobit.loc file should include an entry per line for each twobit 
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  20. #file you have stored.  For example:
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  21. #
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  22. #droPer1	/depot/data2/galaxy/droPer1/droPer1.2bit
    23. 

  23. #apiMel2	/depot/data2/galaxy/apiMel2/apiMel2.2bit
    24. 

  24. #droAna1	/depot/data2/galaxy/droAna1/droAna1.2bit
    25. 

  25. #droAna2	/depot/data2/galaxy/droAna2/droAna2.2bit
    26. 

  26. #...etc...
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