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/tool-data/encode_datasets.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/
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 1#This is a sample file distributed with Galaxy that enables tools
 2#to use ENCODE data.  The encode_datasets.loc file has this format 
 3#(white space characters are TAB characters):
 4#
 5#<EncodeGroup>	<build>	<DisplayName>	<UniqueID>	<FullPathToFile>	<Format>
 6#             Encode Groups: ShortHandCode = Group
 7#                                       CC = chromatin and chromosomes
 8#                                       GT = genes and transcripts
 9#                                      MSA = multi-species sequence analysis
10#                                       TR = transcription regulation
11#                                      ALD = All Latest Datasets
12#All files are assumbed to be BED.
13#
14#ALD	hg17	Latest Datasets (20051208)	all_latest_datasets.20051208.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed	bed
15#ALD	hg17	Latest Datasets (20051208) [gencode_partitioned]	all_latest_datasets.20051208.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed	bed
16#ALD	hg17	Latest Datasets (20051208) [gencode_partitioned]	all_latest_datasets.20051208.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff	gff
17#ALD	hg17	Latest Datasets (20051208)	all_latest_datasets.20051208.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff	gff
18#ALD	hg17	Latest Datasets (20051209)	all_latest_datasets.20051209.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed	bed
19#ALD	hg17	Latest Datasets (20051209) [gencode_partitioned]	all_latest_datasets.20051209.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed	bed
20#ALD	hg17	Latest Datasets (20051209) [gencode_partitioned]	all_latest_datasets.20051209.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff	gff
21#ALD	hg17	Latest Datasets (20051209)	all_latest_datasets.20051209.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff	gff
22#ALD	hg17	Latest Datasets (20051211)	all_latest_datasets.20051211.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed	bed
23#ALD	hg17	Latest Datasets (20051211) [gencode_partitioned]	all_latest_datasets.20051211.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed	bed
24#ALD	hg17	Latest Datasets (20051211) [gencode_partitioned]	all_latest_datasets.20051211.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff	gff
25#ALD	hg17	Latest Datasets (20051211)	all_latest_datasets.20051211.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff	gff
26#ALD	hg17	Latest Datasets (20051212)	all_latest_datasets.20051212.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed	bed
27#ALD	hg17	Latest Datasets (20051212) [gencode_partitioned]	all_latest_datasets.20051212.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed	bed
28#ALD	hg17	Latest Datasets (20051212) [gencode_partitioned]	all_latest_datasets.20051212.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff	gff
29#ALD	hg17	Latest Datasets (20051212)	all_latest_datasets.20051212.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff	gff
30#ALD	hg17	Latest Datasets (20051214)	all_latest_datasets.20051214.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed	bed
31#ALD	hg17	Latest Datasets (20051214) [gencode_partitioned]	all_latest_datasets.20051214.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed	bed
32#ALD	hg17	Latest Datasets (20051214) [gencode_partitioned]	all_latest_datasets.20051214.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff	gff
33#ALD	hg17	Latest Datasets (20051214)	all_latest_datasets.20051214.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff	gff
34#ALD	hg17	Latest Datasets (20051216)	all_latest_datasets.20051216.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed	bed
35#ALD	hg17	Latest Datasets (20051216) [gencode_partitioned]	all_latest_datasets.20051216.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed	bed
36#ALD	hg17	Latest Datasets (20051216) [gencode_partitioned]	all_latest_datasets.20051216.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff	gff
37#ALD	hg17	Latest Datasets (20051216)	all_latest_datasets.20051216.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff	gff
38#ALD	hg17	Latest Datasets (20060105)	all_latest_datasets.20060105.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed	bed
39#ALD	hg17	Latest Datasets (20060105) [gencode_partitioned]	all_latest_datasets.20060105.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed	bed
40#ALD	hg17	Latest Datasets (20060105) [gencode_partitioned]	all_latest_datasets.20060105.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff	gff
41#ALD	hg17	Latest Datasets (20060105)	all_latest_datasets.20060105.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff	gff
42#ALD	hg17	Latest Datasets (20060106)	all_latest_datasets.20060106.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed	bed
43#ALD	hg17	Latest Datasets (20060106) [gencode_partitioned]	all_latest_datasets.20060106.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed	bed
44#ALD	hg17	Latest Datasets (20060106) [gencode_partitioned]	all_latest_datasets.20060106.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff	gff
45#ALD	hg17	Latest Datasets (20060106)	all_latest_datasets.20060106.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff	gff
46#ALD	hg17	Latest Datasets (20060116)	all_latest_datasets.20060116.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed	bed
47#ALD	hg17	Latest Datasets (20060116) [gencode_partitioned]	all_latest_datasets.20060116.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed	bed
48#ALD	hg17	Latest Datasets (20060116) [gencode_partitioned]	all_latest_datasets.20060116.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff	gff
49#ALD	hg17	Latest Datasets (20060116)	all_latest_datasets.20060116.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff	gff
50#ALD	hg17	Latest Datasets (20060124)	all_latest_datasets.20060124.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed	bed
51#ALD	hg17	Latest Datasets (20060124) [gencode_partitioned]	all_latest_datasets.20060124.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed	bed
52#ALD	hg17	Latest Datasets (20060124) [gencode_partitioned]	all_latest_datasets.20060124.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff	gff
53#ALD	hg17	Latest Datasets (20060124)	all_latest_datasets.20060124.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff	gff
54#ALD	hg17	Latest Datasets (20060204)	all_latest_datasets.20060204.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed	bed
55#ALD	hg17	Latest Datasets (20060204) [gencode_partitioned]	all_latest_datasets.20060204.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed	bed
56#ALD	hg17	Latest Datasets (20060204) [gencode_partitioned]	all_latest_datasets.20060204.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff	gff
57#ALD	hg17	Latest Datasets (20060204)	all_latest_datasets.20060204.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff	gff
58#ALD	hg17	Latest Datasets (20060206)	all_latest_datasets.20060206.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed	bed
59#ALD	hg17	Latest Datasets (20060206) [gencode_partitioned]	all_latest_datasets.20060206.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed	bed
60#ALD	hg17	Latest Datasets (20060206) [gencode_partitioned]	all_latest_datasets.20060206.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff	gff
61#ALD	hg17	Latest Datasets (20060206)	all_latest_datasets.20060206.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff	gff
62#ALD	hg17	Latest Datasets (20060209) [gencode_partitioned]	all_latest_datasets.20060209.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed	bed