/tool-data/encode_datasets.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 62 lines · 62 code · 0 blank · 0 comment · 0 complexity · d7224ca21d015be3642db7b44a5ac253 MD5 · raw file 

    

  1. #This is a sample file distributed with Galaxy that enables tools
    2. 

  2. #to use ENCODE data.  The encode_datasets.loc file has this format 
    3. 

  3. #(white space characters are TAB characters):
    4. 

  4. #
    5. 

  5. #<EncodeGroup>	<build>	<DisplayName>	<UniqueID>	<FullPathToFile>	<Format>
    6. 

  6. #             Encode Groups: ShortHandCode = Group
    7. 

  7. #                                       CC = chromatin and chromosomes
    8. 

  8. #                                       GT = genes and transcripts
    9. 

  9. #                                      MSA = multi-species sequence analysis
    10. 

  10. #                                       TR = transcription regulation
    11. 

  11. #                                      ALD = All Latest Datasets
    12. 

  12. #All files are assumbed to be BED.
    13. 

  13. #
    14. 

  14. #ALD	hg17	Latest Datasets (20051208)	all_latest_datasets.20051208.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed	bed
    15. 

  15. #ALD	hg17	Latest Datasets (20051208) [gencode_partitioned]	all_latest_datasets.20051208.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed	bed
    16. 

  16. #ALD	hg17	Latest Datasets (20051208) [gencode_partitioned]	all_latest_datasets.20051208.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff	gff
    17. 

  17. #ALD	hg17	Latest Datasets (20051208)	all_latest_datasets.20051208.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff	gff
    18. 

  18. #ALD	hg17	Latest Datasets (20051209)	all_latest_datasets.20051209.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed	bed
    19. 

  19. #ALD	hg17	Latest Datasets (20051209) [gencode_partitioned]	all_latest_datasets.20051209.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed	bed
    20. 

  20. #ALD	hg17	Latest Datasets (20051209) [gencode_partitioned]	all_latest_datasets.20051209.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff	gff
    21. 

  21. #ALD	hg17	Latest Datasets (20051209)	all_latest_datasets.20051209.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff	gff
    22. 

  22. #ALD	hg17	Latest Datasets (20051211)	all_latest_datasets.20051211.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed	bed
    23. 

  23. #ALD	hg17	Latest Datasets (20051211) [gencode_partitioned]	all_latest_datasets.20051211.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed	bed
    24. 

  24. #ALD	hg17	Latest Datasets (20051211) [gencode_partitioned]	all_latest_datasets.20051211.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff	gff
    25. 

  25. #ALD	hg17	Latest Datasets (20051211)	all_latest_datasets.20051211.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff	gff
    26. 

  26. #ALD	hg17	Latest Datasets (20051212)	all_latest_datasets.20051212.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed	bed
    27. 

  27. #ALD	hg17	Latest Datasets (20051212) [gencode_partitioned]	all_latest_datasets.20051212.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed	bed
    28. 

  28. #ALD	hg17	Latest Datasets (20051212) [gencode_partitioned]	all_latest_datasets.20051212.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff	gff
    29. 

  29. #ALD	hg17	Latest Datasets (20051212)	all_latest_datasets.20051212.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff	gff
    30. 

  30. #ALD	hg17	Latest Datasets (20051214)	all_latest_datasets.20051214.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed	bed
    31. 

  31. #ALD	hg17	Latest Datasets (20051214) [gencode_partitioned]	all_latest_datasets.20051214.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed	bed
    32. 

  32. #ALD	hg17	Latest Datasets (20051214) [gencode_partitioned]	all_latest_datasets.20051214.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff	gff
    33. 

  33. #ALD	hg17	Latest Datasets (20051214)	all_latest_datasets.20051214.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff	gff
    34. 

  34. #ALD	hg17	Latest Datasets (20051216)	all_latest_datasets.20051216.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed	bed
    35. 

  35. #ALD	hg17	Latest Datasets (20051216) [gencode_partitioned]	all_latest_datasets.20051216.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed	bed
    36. 

  36. #ALD	hg17	Latest Datasets (20051216) [gencode_partitioned]	all_latest_datasets.20051216.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff	gff
    37. 

  37. #ALD	hg17	Latest Datasets (20051216)	all_latest_datasets.20051216.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff	gff
    38. 

  38. #ALD	hg17	Latest Datasets (20060105)	all_latest_datasets.20060105.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed	bed
    39. 

  39. #ALD	hg17	Latest Datasets (20060105) [gencode_partitioned]	all_latest_datasets.20060105.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed	bed
    40. 

  40. #ALD	hg17	Latest Datasets (20060105) [gencode_partitioned]	all_latest_datasets.20060105.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff	gff
    41. 

  41. #ALD	hg17	Latest Datasets (20060105)	all_latest_datasets.20060105.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff	gff
    42. 

  42. #ALD	hg17	Latest Datasets (20060106)	all_latest_datasets.20060106.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed	bed
    43. 

  43. #ALD	hg17	Latest Datasets (20060106) [gencode_partitioned]	all_latest_datasets.20060106.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed	bed
    44. 

  44. #ALD	hg17	Latest Datasets (20060106) [gencode_partitioned]	all_latest_datasets.20060106.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff	gff
    45. 

  45. #ALD	hg17	Latest Datasets (20060106)	all_latest_datasets.20060106.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff	gff
    46. 

  46. #ALD	hg17	Latest Datasets (20060116)	all_latest_datasets.20060116.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed	bed
    47. 

  47. #ALD	hg17	Latest Datasets (20060116) [gencode_partitioned]	all_latest_datasets.20060116.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed	bed
    48. 

  48. #ALD	hg17	Latest Datasets (20060116) [gencode_partitioned]	all_latest_datasets.20060116.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff	gff
    49. 

  49. #ALD	hg17	Latest Datasets (20060116)	all_latest_datasets.20060116.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff	gff
    50. 

  50. #ALD	hg17	Latest Datasets (20060124)	all_latest_datasets.20060124.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed	bed
    51. 

  51. #ALD	hg17	Latest Datasets (20060124) [gencode_partitioned]	all_latest_datasets.20060124.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed	bed
    52. 

  52. #ALD	hg17	Latest Datasets (20060124) [gencode_partitioned]	all_latest_datasets.20060124.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff	gff
    53. 

  53. #ALD	hg17	Latest Datasets (20060124)	all_latest_datasets.20060124.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff	gff
    54. 

  54. #ALD	hg17	Latest Datasets (20060204)	all_latest_datasets.20060204.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed	bed
    55. 

  55. #ALD	hg17	Latest Datasets (20060204) [gencode_partitioned]	all_latest_datasets.20060204.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed	bed
    56. 

  56. #ALD	hg17	Latest Datasets (20060204) [gencode_partitioned]	all_latest_datasets.20060204.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff	gff
    57. 

  57. #ALD	hg17	Latest Datasets (20060204)	all_latest_datasets.20060204.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff	gff
    58. 

  58. #ALD	hg17	Latest Datasets (20060206)	all_latest_datasets.20060206.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed	bed
    59. 

  59. #ALD	hg17	Latest Datasets (20060206) [gencode_partitioned]	all_latest_datasets.20060206.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed	bed
    60. 

  60. #ALD	hg17	Latest Datasets (20060206) [gencode_partitioned]	all_latest_datasets.20060206.gencode_partitioned.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff	gff
    61. 

  61. #ALD	hg17	Latest Datasets (20060206)	all_latest_datasets.20060206.gff	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff	gff
    62. 

  62. #ALD	hg17	Latest Datasets (20060209) [gencode_partitioned]	all_latest_datasets.20060209.gencode_partitioned.bed	/depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed	bed
    63.