/tool-data/encode_datasets.loc.sample
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1#This is a sample file distributed with Galaxy that enables tools 2#to use ENCODE data. The encode_datasets.loc file has this format 3#(white space characters are TAB characters): 4# 5#<EncodeGroup> <build> <DisplayName> <UniqueID> <FullPathToFile> <Format> 6# Encode Groups: ShortHandCode = Group 7# CC = chromatin and chromosomes 8# GT = genes and transcripts 9# MSA = multi-species sequence analysis 10# TR = transcription regulation 11# ALD = All Latest Datasets 12#All files are assumbed to be BED. 13# 14#ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.bed bed 15#ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.bed bed 16#ALD hg17 Latest Datasets (20051208) [gencode_partitioned] all_latest_datasets.20051208.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gencode_partitioned.gff gff 17#ALD hg17 Latest Datasets (20051208) all_latest_datasets.20051208.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051208.gff gff 18#ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.bed bed 19#ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.bed bed 20#ALD hg17 Latest Datasets (20051209) [gencode_partitioned] all_latest_datasets.20051209.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gencode_partitioned.gff gff 21#ALD hg17 Latest Datasets (20051209) all_latest_datasets.20051209.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051209.gff gff 22#ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.bed bed 23#ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.bed bed 24#ALD hg17 Latest Datasets (20051211) [gencode_partitioned] all_latest_datasets.20051211.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gencode_partitioned.gff gff 25#ALD hg17 Latest Datasets (20051211) all_latest_datasets.20051211.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051211.gff gff 26#ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.bed bed 27#ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.bed bed 28#ALD hg17 Latest Datasets (20051212) [gencode_partitioned] all_latest_datasets.20051212.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gencode_partitioned.gff gff 29#ALD hg17 Latest Datasets (20051212) all_latest_datasets.20051212.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051212.gff gff 30#ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.bed bed 31#ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.bed bed 32#ALD hg17 Latest Datasets (20051214) [gencode_partitioned] all_latest_datasets.20051214.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gencode_partitioned.gff gff 33#ALD hg17 Latest Datasets (20051214) all_latest_datasets.20051214.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051214.gff gff 34#ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.bed bed 35#ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.bed bed 36#ALD hg17 Latest Datasets (20051216) [gencode_partitioned] all_latest_datasets.20051216.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gencode_partitioned.gff gff 37#ALD hg17 Latest Datasets (20051216) all_latest_datasets.20051216.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20051216.gff gff 38#ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.bed bed 39#ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.bed bed 40#ALD hg17 Latest Datasets (20060105) [gencode_partitioned] all_latest_datasets.20060105.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gencode_partitioned.gff gff 41#ALD hg17 Latest Datasets (20060105) all_latest_datasets.20060105.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060105.gff gff 42#ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.bed bed 43#ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.bed bed 44#ALD hg17 Latest Datasets (20060106) [gencode_partitioned] all_latest_datasets.20060106.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gencode_partitioned.gff gff 45#ALD hg17 Latest Datasets (20060106) all_latest_datasets.20060106.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060106.gff gff 46#ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.bed bed 47#ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.bed bed 48#ALD hg17 Latest Datasets (20060116) [gencode_partitioned] all_latest_datasets.20060116.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gencode_partitioned.gff gff 49#ALD hg17 Latest Datasets (20060116) all_latest_datasets.20060116.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060116.gff gff 50#ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.bed bed 51#ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.bed bed 52#ALD hg17 Latest Datasets (20060124) [gencode_partitioned] all_latest_datasets.20060124.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gencode_partitioned.gff gff 53#ALD hg17 Latest Datasets (20060124) all_latest_datasets.20060124.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060124.gff gff 54#ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.bed bed 55#ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.bed bed 56#ALD hg17 Latest Datasets (20060204) [gencode_partitioned] all_latest_datasets.20060204.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gencode_partitioned.gff gff 57#ALD hg17 Latest Datasets (20060204) all_latest_datasets.20060204.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060204.gff gff 58#ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.bed bed 59#ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.bed bed 60#ALD hg17 Latest Datasets (20060206) [gencode_partitioned] all_latest_datasets.20060206.gencode_partitioned.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gencode_partitioned.gff gff 61#ALD hg17 Latest Datasets (20060206) all_latest_datasets.20060206.gff /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060206.gff gff 62#ALD hg17 Latest Datasets (20060209) [gencode_partitioned] all_latest_datasets.20060209.gencode_partitioned.bed /depot/data2/galaxy/encode-data/all_latest/all_latest_datasets.20060209.gencode_partitioned.bed bed