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/tool-data/sift_db.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/
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  1. #This is a sample file distributed with Galaxy that enables tools to use
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  2. #a directory of sqlite files for use with SIFT.  You will need to supply
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  3. #these files and then create a sift_db.loc file similar to this one (store
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  4. #it in this directory) that points to the directories in which those files
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  5. #are stored.  The sift_db.loc file has this format (white space characters
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  6. #are TAB characters):
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  7. #
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  8. #<build>	<file_path>
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  9. #
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  10. #So, for example, if your sift_db.loc began like this:
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  11. #
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  12. #hg18	/galaxy/data/hg18/misc/sift/Human_db_36
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  13. #
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  14. #then your /galaxy/data/hg18/misc/sift/Human_db_36 directory would need to
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  15. #contain the following sqlite files, among others:
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  16. #
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  17. #-rw-r--r-- 1 g2test g2data 3010870272 Sep  2 14:09 Human_CHR10.sqlite
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  18. #-rw-r--r-- 1 g2test g2data 2926365696 Sep  2 15:09 Human_CHR11.sqlite
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  19. #-rw-r--r-- 1 g2test g2data 2557210624 Sep  2 14:19 Human_CHR12.sqlite
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  20. #
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  21. #hg18	/galaxy/data/hg18/misc/sift/Human_db_36
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  22. #hg19	/galaxy/data/hg19/misc/sift/Human_db_37
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