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/tool-data/quality_scores.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/
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 1#This is a sample file distributed with Galaxy that is used by some
 2#regional variation tools.  The quality_scores.loc file has this format (white 
 3#space characters are TAB characters):
 4#
 5#<build>	<QualityScoreDirectoryPath>
 6#
 7#So, for example, if you had panTro2 qualit score files stored in 
 8#/depot/data2/galaxy/panTro2/quality_scores, then the quality_scores.loc entry 
 9#would look like this:
10#
11#panTro2	/depot/data2/galaxy/panTro2/quality_scores
12#
13#and your /depot/data2/galaxy/panTro2/quality_scores directory would 
14#contain all of your quality score files (e.g.):
15#
16#-rw-r--r--  1 gua110 galaxy 10964768 2007-10-02 10:33 chr10.qa.bqv
17#-rw-r--r--  1 gua110 galaxy  1749899 2007-10-02 10:33 chr10_random.qa.bqv
18#-rw-r--r--  1 gua110 galaxy 11310721 2007-10-02 10:33 chr11.qa.bqv
19#...etc...
20#
21#Your quality_scores.loc file should include an entry per line for each quality score 
22#file you have stored.  For example:
23#
24#panTro2	/depot/data2/galaxy/panTro2/quality_scores
25#rheMac2	/depot/data2/galaxy/rheMac2/quality_scores
26#ponAbe2	/depot/data2/galaxy/ponAbe2/quality_scores