/tool-data/quality_scores.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 26 lines · 26 code · 0 blank · 0 comment · 0 complexity · 40cd2b1344a9c27cd41c953787fe2d3c MD5 · raw file 

    

  1. #This is a sample file distributed with Galaxy that is used by some
    2. 

  2. #regional variation tools.  The quality_scores.loc file has this format (white 
    3. 

  3. #space characters are TAB characters):
    4. 

  4. #
    5. 

  5. #<build>	<QualityScoreDirectoryPath>
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  6. #
    7. 

  7. #So, for example, if you had panTro2 qualit score files stored in 
    8. 

  8. #/depot/data2/galaxy/panTro2/quality_scores, then the quality_scores.loc entry 
    9. 

  9. #would look like this:
    10. 

  10. #
    11. 

  11. #panTro2	/depot/data2/galaxy/panTro2/quality_scores
    12. 

  12. #
    13. 

  13. #and your /depot/data2/galaxy/panTro2/quality_scores directory would 
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  14. #contain all of your quality score files (e.g.):
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  15. #
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  16. #-rw-r--r--  1 gua110 galaxy 10964768 2007-10-02 10:33 chr10.qa.bqv
    17. 

  17. #-rw-r--r--  1 gua110 galaxy  1749899 2007-10-02 10:33 chr10_random.qa.bqv
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  18. #-rw-r--r--  1 gua110 galaxy 11310721 2007-10-02 10:33 chr11.qa.bqv
    19. 

  19. #...etc...
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  20. #
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  21. #Your quality_scores.loc file should include an entry per line for each quality score 
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  22. #file you have stored.  For example:
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  23. #
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  24. #panTro2	/depot/data2/galaxy/panTro2/quality_scores
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  25. #rheMac2	/depot/data2/galaxy/rheMac2/quality_scores
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  26. #ponAbe2	/depot/data2/galaxy/ponAbe2/quality_scores
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