/tool-data/binned_scores.loc.sample
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1#This is a sample file distributed with Galaxy that enables tools 2#to use a directory of FileBinnedArray data files. You will need 3#to create these data files and then create a binned_scores.loc file 4#similar to this one (store it in this directory ) that points to 5#the directories in which those files are stored. The binned_scores.loc 6#file has this format (white space characters are TAB characters): 7# 8#<build> <description> <dir> 9# 10#So, for example, if you had hg16 ENCODE binCons on MLAGAN alignments 11#stored in /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan, 12#then the binned_scores.loc entry would look like this: 13# 14#hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan 15# 16#and your /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan 17#directory would contain all of your "binned" files (e.g.): 18# 19#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 ENm001 20#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 ENm002 21#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 ENm003 22#...etc... 23# 24#Your binned_scores.loc file should include an entry per line for each 25#"binned" file you have stored. For example: 26# 27#hg16 ENCODE binCons on MLAGAN alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_lagan 28#hg16 ENCODE binCons on TBA alignments /depot/data2/galaxy/binned_scores/hg16/encode_bincons_tba 29#hg16 ENCODE GERP on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_lagan 30#hg16 ENCODE GERP on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_gerp_tba 31#hg16 ENCODE phastCons on MLAGAN alignment /depot/data2/galaxy/binned_scores/hg16/encode_phastcons_lagan 32#hg16 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg16/encode_phatcons_tba 33#hg17 ENCODE phastCons on TBA alignment /depot/data2/galaxy/binned_scores/hg17/phastcons_encode_sep2005_tba 34#hg17 phastCons on 8-species multiz, 16-Jun-2005 /depot/data2/galaxy/binned_scores/hg17/phastcons_mzPt1Mm5Rn3Cf1Gg2Fr1Dr1/ 35#hg17 phastCons on 17-species multiz, 13-Apr-2006 /depot/data2/galaxy/binned_scores/hg17/phastCons17way/ba 36#hg17 ESPERR Regulatory Potential, 7-species, 23-Jun-2006 /depot/data2/galaxy/binned_scores/hg17/esperr_rp_7way/ba 37#hg18 phastCons on 17-species multiz, 06-Apr-2006 /depot/data2/galaxy/binned_scores/hg18/phastCons17way/ba