/tool-data/regions.loc.sample

 1#This is a sample file distributed with Galaxy that is used by some
 2#ENCODE tools.  The regions.loc file has this format (white space 
 3#characters are TAB characters):
 4#
 5#<build>	<uid>	<region_description>	<file_path>
 6#
 7#So, for example, if you had ENCODE Regions for build hg16 stored in 
 8#/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed, then the
 9#regions.loc entry would look like this:
10#
11#hg16	encode_hg16		ENCODE Regions	/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
12#
13#and your /depot/data2/galaxy/regions/ directory would 
14#contain all of your regions files (e.g.):
15#
16#-rw-r--r--   1 dan  g2cache 1367 2006-03-14 13:55 encode_regions_coords_hg16.bed
17#-rw-r--r--   1 dan  g2cache 1367 2006-03-14 13:53 encode_regions_coords_hg17.bed
18#...etc...
19#
20#Your regions.loc file should include an entry per line for each region 
21#file you have stored.  For example:
22#
23#hg16	encode_hg16	ENCODE Regions	/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed 
24#hg17	encode_hg17	ENCODE Regions	/depot/data2/galaxy/regions/encode_regions_coords_hg17.bed