/tool-data/ngs_sim_fasta.loc.sample

 1#This is a sample file distributed with Galaxy that enables the NGS simulation
 2#tool to use some FASTA files. You will need to make sure that these FASTA files
 3#are in place and then create the ngs_sim.loc file similar to this one (store it
 4#in this directory) that points to the locations of those files. The ngs_sim.loc
 5#file has this format (white space characters are TAB characters):
 6#
 7#<unique_build_id>		<dbkey>		<display_name>		<file_base_path>
 8#
 9#So, for example, if you had hg18chrM.fa in 
10#/data/path/hg18/seq/, 
11#then the ngs_sim.loc entry would look like this:
12#
13#hg18chrM	hg18	hg18chrM	/data/path/hg18/seq/hg18chrM.fa
14#
15#Your ngs_sim.loc file should include an entry per line for each FASTA file you
16#have stored.
17#
18#hg18chrM	hg18	hg18chrM	/data/path/hg18/seq/hg18chrM.fa
19#phiX174	phiX	phiX174		/data/path/genome/phiX/seq/phiX.fa
20#pUC18		pUC18	pUC18		/data/path/genome/pUC18/seq/pUC18.fa