/tool-data/ngs_sim_fasta.loc.sample

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  1. #This is a sample file distributed with Galaxy that enables the NGS simulation
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  2. #tool to use some FASTA files. You will need to make sure that these FASTA files
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  3. #are in place and then create the ngs_sim.loc file similar to this one (store it
    4. 

  4. #in this directory) that points to the locations of those files. The ngs_sim.loc
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  5. #file has this format (white space characters are TAB characters):
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  6. #
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  7. #<unique_build_id>		<dbkey>		<display_name>		<file_base_path>
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  8. #
    9. 

  9. #So, for example, if you had hg18chrM.fa in 
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  10. #/data/path/hg18/seq/, 
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  11. #then the ngs_sim.loc entry would look like this:
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  12. #
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  13. #hg18chrM	hg18	hg18chrM	/data/path/hg18/seq/hg18chrM.fa
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  14. #
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  15. #Your ngs_sim.loc file should include an entry per line for each FASTA file you
    16. 

  16. #have stored.
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  17. #
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  18. #hg18chrM	hg18	hg18chrM	/data/path/hg18/seq/hg18chrM.fa
    19. 

  19. #phiX174	phiX	phiX174		/data/path/genome/phiX/seq/phiX.fa
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  20. #pUC18		pUC18	pUC18		/data/path/genome/pUC18/seq/pUC18.fa
    21.