/tool-data/gd.snps.loc.sample

https://bitbucket.org/cistrome/cistrome-harvard/ · Unknown · 21 lines · 21 code · 0 blank · 0 comment · 0 complexity · b2ecfbf180dfa187d9b87b2e6c51dab1 MD5 · raw file

  1. # This is a sample file distributed with Galaxy that enables tools to
  2. # use a directory of SNP call files. You will need to create these SNP
  3. # call files and then create a gd.snps.loc file similar to this one (store
  4. # it in this directory) that points to the directories in which these
  5. # SNP call files are stored. The gd.snps.loc file has the following
  6. # format (white space characters are TAB characters):
  7. #
  8. #<species> <SNP_call_file_path>
  9. #
  10. # So, for example, if you had a SNP call file located at
  11. # /galaxy/data/location/gd/snps/bighorn_snps.txt for a collection of
  12. # Ovis canadensis SNPs, then the gd.snps.loc entry would look like this:
  13. #
  14. #bighorn /galaxy/data/location/gd/snps/bighorn_snps.txt
  15. #
  16. # Your gd.snps.loc file should include an entry for each pair of species
  17. # SNPs and SNP call file. For example:
  18. #
  19. #bighorn /galaxy/data/location/gd/snps/bighorn_snps.txt
  20. #tasmanian_devil /galaxy/data/location/gd/snps/tasmanian_devil_snps.txt
  21. #...etc...