/tools/filters/mergeCols.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 63 lines · 50 code · 13 blank · 0 comment · 0 complexity · 3c446f1533e5d681acb47e79c96153db MD5 · raw file
- <tool id="mergeCols1" name="Merge Columns" version="1.0.1">
- <description>together</description>
- <command interpreter="python">
- mergeCols.py
- $input1
- $out_file1
- $col1
- $col2
- #for $col in $columns
- ${col.datacol}
- #end for
- </command>
- <inputs>
- <param format="tabular" name="input1" type="data" label="Select data" help="Dataset missing? See TIP below."/>
- <param name="col1" label="Merge column" type="data_column" data_ref="input1" />
- <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/>
- <repeat name="columns" title="Columns">
- <param name="datacol" label="Add column" type="data_column" data_ref="input1" />
- </repeat>
- </inputs>
- <outputs>
- <data format="tabular" name="out_file1" />
- </outputs>
- <tests>
- <test>
- <param name="input1" value="1.bed"/>
- <param name="col1" value="4" />
- <param name="col2" value="1" />
- <param name="datacol" value="6" />
- <output name="out_file1" file="mergeCols.dat"/>
- </test>
- </tests>
- <help>
- .. class:: infomark
- **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
- -----
- **What it does**
- This tool merges columns together. Any number of valid columns can be merged in any order.
- -----
- **Example**
- Input dataset (five columns: c1, c2, c3, c4, and c5)::
- 1 10 1000 gene1 chr
- 2 100 1500 gene2 chr
- merging columns "**c5,c1**" will return::
- 1 10 1000 gene1 chr chr1
- 2 100 1500 gene2 chr chr2
- .. class:: warningmark
-
- Note that all original columns are preserved and the result of merge is added as the rightmost column.
- </help>
- </tool>