<tool id="joiner2" name="Relational join 2">

  <description>two datasets a specific column of which has the same value</description>

  <command>sort -k $col1 $input1 > $input1.tmp; sort -k $col2 $input2 > $input2.tmp; join -1 $col1 -2 $col2 $input1.tmp $input2.tmp | tr " " "\t" > $out_file1; rm -rf $input1.tmp $input2.tmp </command>

  <inputs>

    <param name="input1" label="Combine dataset" format="tabular" type="data" />

    <param name="col1" label="using column" type="data_column" data_ref="input1" />

    <param name="input2" label="with dataset"	format="tabular" type="data"/>

    <param name="col2" label="and column" type="data_column" data_ref="input2" />

  </inputs>

  <outputs>

    <data format="input" name="out_file1" metadata_source="input1" />

  </outputs>

</tool>