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/tools/filters/joiner2.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 13 lines | 13 code | 0 blank | 0 comment | 0 complexity | b65797d512ed91cb608115752b188d64 MD5 | raw file
 1<tool id="joiner2" name="Relational join 2">
 2  <description>two datasets a specific column of which has the same value</description>
 3  <command>sort -k $col1 $input1 > $input1.tmp; sort -k $col2 $input2 > $input2.tmp; join -1 $col1 -2 $col2 $input1.tmp $input2.tmp | tr " " "\t" > $out_file1; rm -rf $input1.tmp $input2.tmp </command>
 4  <inputs>
 5    <param name="input1" label="Combine dataset" format="tabular" type="data" />
 6    <param name="col1" label="using column" type="data_column" data_ref="input1" />
 7    <param name="input2" label="with dataset"	format="tabular" type="data"/>
 8    <param name="col2" label="and column" type="data_column" data_ref="input2" />
 9  </inputs>
10  <outputs>
11    <data format="input" name="out_file1" metadata_source="input1" />
12  </outputs>
13</tool>