/tools/stats/count_gff_features.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 26 lines · 26 code · 0 blank · 0 comment · 0 complexity · 3183b17ccafd48b642ab38e4712f2bdf MD5 · raw file
- <tool id="count_gff_features" name="Count GFF Features" version="0.1">
- <description></description>
- <command interpreter="python">
- count_gff_features.py $input > $output
- </command>
- <inputs>
- <param format="gff" name="input" type="data" label="GFF Dataset to Filter"/>
- </inputs>
- <outputs>
- <data format="txt" name="output"/>
- </outputs>
- <tests>
- <test>
- <param name="input" value="gff2bed_in2.gff"/>
- <output name="output" file="count_gff_features_out1.txt"/>
- </test>
- <test>
- <param name="input" value="gff_filter_by_feature_count_out1.gff"/>
- <output name="output" file="count_gff_features_out2.txt"/>
- </test>
- </tests>
- <help>
- Counts the number of features in a GFF dataset. GFF features are often spread across multiple lines; this tool counts the number of
- features in dataset rather than the number of lines.
- </help>
- </tool>