/tools/solid_tools/solid_qual_boxplot.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 40 lines · 25 code · 15 blank · 0 comment · 0 complexity · ed95adea556e5cce6a1eb41f5712d43f MD5 · raw file
- <tool id="solid_qual_boxplot" name="Draw quality score boxplot" version="1.0.0">
- <description>for SOLiD data</description>
-
- <command interpreter="bash">qualsolid_boxplot_graph.sh -t '$input.name' -i $input -o $output</command>
-
- <inputs>
- <param format="txt" name="input" type="data" label="Statistics report file (output of 'Quality Statistics for SOLiD data' tool)" />
- </inputs>
- <outputs>
- <data format="png" name="output" metadata_source="input" />
- </outputs>
- <help>
- **What it does**
- Creates a boxplot graph for the quality scores in the library.
- .. class:: infomark
- **TIP:** Use the **Quality Statistics for SOLiD data** tool to generate the report file needed for this tool.
- -----
- **Output Example**
- * Black horizontal lines are medians
- * Rectangular red boxes show the Inter-quartile Range (IQR) (top value is Q3, bottom value is Q1)
- * Whiskers show outliers at max. 1.5*IQR
- .. image:: ${static_path}/images/solid_qual.png
- ------
- This tool is based on `FASTX-toolkit`__ by Assaf Gordon.
- .. __: http://hannonlab.cshl.edu/fastx_toolkit/
- </help>
- </tool>