/tools/data_source/epigraph_import_test.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 30 lines · 25 code · 0 blank · 5 comment · 0 complexity · a6431a0c4f4a0c209d23d7fb4a1cd60b MD5 · raw file

  1. <?xml version="1.0"?>
  2. <!--
  3. If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
  4. the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
  5. initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
  6. -->
  7. <tool name="EpiGRAPH" id="epigraph_import_test" tool_type="data_source">
  8. <description> test server</description>
  9. <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
  10. <inputs action="http://epigraph.mpi-inf.mpg.de/WebGRAPH_Public_Test/faces/Login.jsp" check_values="false" method="get">
  11. <display>go to EpiGRAPH server $GALAXY_URL</display>
  12. <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=epigraph_import_test" />
  13. </inputs>
  14. <request_param_translation>
  15. <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
  16. <request_param galaxy_name="URL" remote_name="URL" missing="" />
  17. <request_param galaxy_name="dbkey" remote_name="GENOME" missing="?" />
  18. <request_param galaxy_name="organism" remote_name="organism" missing="" />
  19. <request_param galaxy_name="table" remote_name="table" missing="" />
  20. <request_param galaxy_name="description" remote_name="description" missing="" />
  21. <request_param galaxy_name="name" remote_name="NAME" missing="EpiGRAPH query" />
  22. <request_param galaxy_name="info" remote_name="INFO" missing="" />
  23. <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
  24. </request_param_translation>
  25. <uihints minwidth="800"/>
  26. <outputs>
  27. <data name="output" format="txt" />
  28. </outputs>
  29. <options sanitize="False" refresh="True"/>
  30. </tool>