/tools/data_source/flymine.xml
XML | 35 lines | 29 code | 1 blank | 5 comment | 0 complexity | 022bafe5c669bb66dcd21f682e0f5468 MD5 | raw file
1<?xml version="1.0"?> 2<!-- 3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in 4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the 5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. 6--> 7<tool name="Flymine" id="flymine" tool_type="data_source"> 8 <description>server</description> 9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> 10 <inputs action="http://www.flymine.org" check_values="false" method="get"> 11 <display>go to Flymine server $GALAXY_URL</display> 12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=flymine" /> 13 </inputs> 14 <request_param_translation> 15 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> 16 <request_param galaxy_name="URL" remote_name="URL" missing="" /> 17 <request_param galaxy_name="dbkey" remote_name="db" missing="?" /> 18 <request_param galaxy_name="organism" remote_name="organism" missing="" /> 19 <request_param galaxy_name="table" remote_name="table" missing="" /> 20 <request_param galaxy_name="description" remote_name="description" missing="" /> 21 <request_param galaxy_name="name" remote_name="name" missing="FlyMine query" /> 22 <request_param galaxy_name="info" remote_name="info" missing="" /> 23 <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" > 24 <value_translation> 25 <value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect --> 26 </value_translation> 27 </request_param> 28 </request_param_translation> 29 <uihints minwidth="800"/> 30 <outputs> 31 <data name="output" format="txt" /> 32 </outputs> 33 <options sanitize="False" refresh="True"/> 34</tool> 35