/tools/data_source/flymine.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 35 lines · 29 code · 1 blank · 5 comment · 0 complexity · 022bafe5c669bb66dcd21f682e0f5468 MD5 · raw file
- <?xml version="1.0"?>
- <!--
- If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
- the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
- initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
- -->
- <tool name="Flymine" id="flymine" tool_type="data_source">
- <description>server</description>
- <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
- <inputs action="http://www.flymine.org" check_values="false" method="get">
- <display>go to Flymine server $GALAXY_URL</display>
- <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=flymine" />
- </inputs>
- <request_param_translation>
- <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
- <request_param galaxy_name="URL" remote_name="URL" missing="" />
- <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
- <request_param galaxy_name="organism" remote_name="organism" missing="" />
- <request_param galaxy_name="table" remote_name="table" missing="" />
- <request_param galaxy_name="description" remote_name="description" missing="" />
- <request_param galaxy_name="name" remote_name="name" missing="FlyMine query" />
- <request_param galaxy_name="info" remote_name="info" missing="" />
- <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" >
- <value_translation>
- <value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect -->
- </value_translation>
- </request_param>
- </request_param_translation>
- <uihints minwidth="800"/>
- <outputs>
- <data name="output" format="txt" />
- </outputs>
- <options sanitize="False" refresh="True"/>
- </tool>