/tools/data_source/genbank.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 25 lines · 22 code · 2 blank · 1 comment · 0 complexity · 644fca6bff68688f035a0e5a467058e4 MD5 · raw file

  1. <tool id="genbank" name="Connect to Genbank">
  2. <!-- <description>queries genbank</description> -->
  3. <command interpreter="python">genbank.py $mode "$text" $output</command>
  4. <inputs>
  5. <param name="mode" type="select">
  6. <option value="nucleotide">nucleotide database</option>
  7. <option value="protein">proteins database</option>
  8. <label>Get sequences from the</label>
  9. </param>
  10. <param name="text" size="40" type="text" value="6273291">
  11. <label>with accession ID</label>
  12. </param>
  13. </inputs>
  14. <outputs>
  15. <data format="fasta" name="output" />
  16. </outputs>
  17. <help>
  18. At the moment this tool allows the following simple searches:
  19. - by GI: **51594135**
  20. - by accession: **CF622840**
  21. - using text: **human hbb1** (this feature is experimental)
  22. </help>
  23. </tool>