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/tools/data_source/genbank.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 25 lines | 22 code | 2 blank | 1 comment | 0 complexity | 644fca6bff68688f035a0e5a467058e4 MD5 | raw file
 1<tool id="genbank" name="Connect to Genbank">
 2<!--  <description>queries genbank</description> -->
 3  <command interpreter="python">genbank.py $mode "$text" $output</command>
 4  <inputs>
 5    <param name="mode" type="select">
 6      <option value="nucleotide">nucleotide database</option>
 7      <option value="protein">proteins database</option>
 8      <label>Get sequences from the</label>
 9    </param>
10    <param name="text" size="40" type="text" value="6273291">
11      <label>with accession ID</label>
12    </param>   
13  </inputs>
14  <outputs>
15    <data format="fasta" name="output" />
16  </outputs>
17  <help>
18At the moment this tool allows the following simple searches:
19
20- by GI: **51594135**
21- by accession: **CF622840**
22- using text: **human hbb1** (this feature is experimental)
23  </help>
24
25</tool>