/tools/data_source/genbank.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 25 lines · 22 code · 2 blank · 1 comment · 0 complexity · 644fca6bff68688f035a0e5a467058e4 MD5 · raw file
- <tool id="genbank" name="Connect to Genbank">
- <!-- <description>queries genbank</description> -->
- <command interpreter="python">genbank.py $mode "$text" $output</command>
- <inputs>
- <param name="mode" type="select">
- <option value="nucleotide">nucleotide database</option>
- <option value="protein">proteins database</option>
- <label>Get sequences from the</label>
- </param>
- <param name="text" size="40" type="text" value="6273291">
- <label>with accession ID</label>
- </param>
- </inputs>
- <outputs>
- <data format="fasta" name="output" />
- </outputs>
- <help>
- At the moment this tool allows the following simple searches:
-
- - by GI: **51594135**
- - by accession: **CF622840**
- - using text: **human hbb1** (this feature is experimental)
- </help>
-
- </tool>