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/tools/data_source/wormbase.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 27 lines | 27 code | 0 blank | 0 comment | 0 complexity | 62c4557cd75d62949349f7a86b531467 MD5 | raw file
 1<?xml version="1.0"?>
 2<tool name="WormBase" id="wormbase" tool_type="data_source" version="1.0.1">
 3    <description>server</description>
 4    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
 5    <inputs action="http://www.wormbase.org/tools/genome/gbrowse/c_elegans/" check_values="false" target="_top"> 
 6        <display>go to Wormbase server $GALAXY_URL</display>
 7        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase" />
 8    </inputs>
 9    <request_param_translation>
10        <request_param galaxy_name="URL" remote_name="URL" missing="">
11            <append_param separator="&amp;" first_separator="?" join="=">
12                <value name="d" missing="" />
13                <value name="dbkey" missing="" />
14                <value name="q" missing="" />
15                <value name="s" missing="" />
16                <value name="t" missing="" />
17            </append_param>
18        </request_param>
19        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
20        <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
21    </request_param_translation>
22    <uihints minwidth="800"/>
23    <outputs>
24        <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
25    </outputs>
26    <options sanitize="False" refresh="True"/>
27</tool>