/tools/data_source/wormbase.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 27 lines · 27 code · 0 blank · 0 comment · 0 complexity · 62c4557cd75d62949349f7a86b531467 MD5 · raw file
- <?xml version="1.0"?>
- <tool name="WormBase" id="wormbase" tool_type="data_source" version="1.0.1">
- <description>server</description>
- <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
- <inputs action="http://www.wormbase.org/tools/genome/gbrowse/c_elegans/" check_values="false" target="_top">
- <display>go to Wormbase server $GALAXY_URL</display>
- <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase" />
- </inputs>
- <request_param_translation>
- <request_param galaxy_name="URL" remote_name="URL" missing="">
- <append_param separator="&" first_separator="?" join="=">
- <value name="d" missing="" />
- <value name="dbkey" missing="" />
- <value name="q" missing="" />
- <value name="s" missing="" />
- <value name="t" missing="" />
- </append_param>
- </request_param>
- <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
- <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
- </request_param_translation>
- <uihints minwidth="800"/>
- <outputs>
- <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
- </outputs>
- <options sanitize="False" refresh="True"/>
- </tool>