/tools/data_source/wormbase.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 27 lines · 27 code · 0 blank · 0 comment · 0 complexity · 62c4557cd75d62949349f7a86b531467 MD5 · raw file

  1. <?xml version="1.0"?>
  2. <tool name="WormBase" id="wormbase" tool_type="data_source" version="1.0.1">
  3. <description>server</description>
  4. <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
  5. <inputs action="http://www.wormbase.org/tools/genome/gbrowse/c_elegans/" check_values="false" target="_top">
  6. <display>go to Wormbase server $GALAXY_URL</display>
  7. <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=wormbase" />
  8. </inputs>
  9. <request_param_translation>
  10. <request_param galaxy_name="URL" remote_name="URL" missing="">
  11. <append_param separator="&amp;" first_separator="?" join="=">
  12. <value name="d" missing="" />
  13. <value name="dbkey" missing="" />
  14. <value name="q" missing="" />
  15. <value name="s" missing="" />
  16. <value name="t" missing="" />
  17. </append_param>
  18. </request_param>
  19. <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
  20. <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
  21. </request_param_translation>
  22. <uihints minwidth="800"/>
  23. <outputs>
  24. <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
  25. </outputs>
  26. <options sanitize="False" refresh="True"/>
  27. </tool>