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/tools/data_source/fly_modencode.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 32 lines | 32 code | 0 blank | 0 comment | 0 complexity | c38fdf218d30f00a17da1e769c954368 MD5 | raw file
 1<?xml version="1.0"?>
 2<tool name="modENCODE fly" id="modENCODEfly" tool_type="data_source">
 3    <description>server</description>
 4    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
 5    <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/fly" check_values="false" target="_top"> 
 6        <display>go to modENCODE fly server $GALAXY_URL</display>
 7        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEfly" />
 8    </inputs>
 9    <request_param_translation>
10        <request_param galaxy_name="dbkey" remote_name="dbkey" missing="dm2" >
11            <value_translation>
12                <value galaxy_value="dm2" remote_value="fly" />
13            </value_translation>
14        </request_param>
15        <request_param galaxy_name="URL" remote_name="URL" missing="">
16            <append_param separator="&amp;" first_separator="?" join="=">
17                <value name="d" missing="" />
18                <value name="dbkey" missing="dm2" />
19                <value name="q" missing="" />
20                <value name="s" missing="" />
21                <value name="t" missing="" />
22            </append_param>
23        </request_param>
24        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
25        <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
26    </request_param_translation>
27    <uihints minwidth="800"/>
28    <outputs>
29        <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
30    </outputs>
31    <options sanitize="False" refresh="True"/>
32</tool>