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/tools/data_source/worm_modencode.xml

https://bitbucket.org/cistrome/cistrome-harvard/
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  1. <?xml version="1.0"?>
  2. <tool name="modENCODE worm" id="modENCODEworm" tool_type="data_source">
  3. <description>server</description>
  4. <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
  5. <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/worm" check_values="false" target="_top">
  6. <display>go to modENCODE worm server $GALAXY_URL</display>
  7. <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEworm" />
  8. </inputs>
  9. <request_param_translation>
  10. <request_param galaxy_name="dbkey" remote_name="dbkey" missing="ce6" >
  11. <value_translation>
  12. <value galaxy_value="ce6" remote_value="worm" />
  13. </value_translation>
  14. </request_param>
  15. <request_param galaxy_name="URL" remote_name="URL" missing="">
  16. <append_param separator="&amp;" first_separator="?" join="=">
  17. <value name="d" missing="" />
  18. <value name="dbkey" missing="ce6" />
  19. <value name="q" missing="" />
  20. <value name="s" missing="" />
  21. <value name="t" missing="" />
  22. </append_param>
  23. </request_param>
  24. <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
  25. <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
  26. </request_param_translation>
  27. <uihints minwidth="800"/>
  28. <outputs>
  29. <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
  30. </outputs>
  31. <options sanitize="False" refresh="True"/>
  32. </tool>