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/tools/data_source/cbi_rice_mart.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 39 lines | 34 code | 0 blank | 5 comment | 0 complexity | 2e1bb68d17a8e4186b7178982fa2a302 MD5 | raw file
 1<?xml version="1.0"?>
 2<!--
 3    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
 4    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
 5    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
 6-->
 7<tool name="CBI Rice Mart" id="cbi_rice_mart" tool_type="data_source" version="1.0.1">
 8    <description>rice mart</description>
 9    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
10    <inputs action="http://ricemart.cbi.edu.cn/biomart/martview/" check_values="false" method="get" target="_top">
11        <display>go to RMap rice mart $GALAXY_URL</display>
12        <param name="GALAXY_URL" type="baseurl" value="/tool_runner/biomart" />
13    </inputs>
14    <request_param_translation>
15        <request_param galaxy_name="URL" remote_name="URL" missing="">
16            <append_param separator="&amp;" first_separator="?" join="=">
17                <value name="_export" missing="1" />
18                <value name="GALAXY_URL" missing="0" />
19            </append_param>
20        </request_param>
21        <request_param galaxy_name="data_type" remote_name="exportView_outputformat" missing="tabular" >
22            <value_translation>
23                <value galaxy_value="tabular" remote_value="TSV" />
24            </value_translation>
25        </request_param>
26        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
27        <request_param galaxy_name="dbkey" remote_name="dbkey" missing="?" />
28        <request_param galaxy_name="organism" remote_name="organism" missing="" />
29        <request_param galaxy_name="table" remote_name="table" missing="" />
30        <request_param galaxy_name="description" remote_name="description" missing="" />
31        <request_param galaxy_name="name" remote_name="name" missing="Rice mart query" />
32        <request_param galaxy_name="info" remote_name="info" missing="" />
33    </request_param_translation>
34    <uihints minwidth="800"/>
35    <outputs>
36        <data name="output" format="tabular" />
37    </outputs>
38    <options sanitize="False" refresh="True"/>
39</tool>