/tools/data_source/cbi_rice_mart.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 39 lines · 34 code · 0 blank · 5 comment · 0 complexity · 2e1bb68d17a8e4186b7178982fa2a302 MD5 · raw file

  1. <?xml version="1.0"?>
  2. <!--
  3. If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
  4. the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
  5. initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
  6. -->
  7. <tool name="CBI Rice Mart" id="cbi_rice_mart" tool_type="data_source" version="1.0.1">
  8. <description>rice mart</description>
  9. <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
  10. <inputs action="http://ricemart.cbi.edu.cn/biomart/martview/" check_values="false" method="get" target="_top">
  11. <display>go to RMap rice mart $GALAXY_URL</display>
  12. <param name="GALAXY_URL" type="baseurl" value="/tool_runner/biomart" />
  13. </inputs>
  14. <request_param_translation>
  15. <request_param galaxy_name="URL" remote_name="URL" missing="">
  16. <append_param separator="&amp;" first_separator="?" join="=">
  17. <value name="_export" missing="1" />
  18. <value name="GALAXY_URL" missing="0" />
  19. </append_param>
  20. </request_param>
  21. <request_param galaxy_name="data_type" remote_name="exportView_outputformat" missing="tabular" >
  22. <value_translation>
  23. <value galaxy_value="tabular" remote_value="TSV" />
  24. </value_translation>
  25. </request_param>
  26. <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
  27. <request_param galaxy_name="dbkey" remote_name="dbkey" missing="?" />
  28. <request_param galaxy_name="organism" remote_name="organism" missing="" />
  29. <request_param galaxy_name="table" remote_name="table" missing="" />
  30. <request_param galaxy_name="description" remote_name="description" missing="" />
  31. <request_param galaxy_name="name" remote_name="name" missing="Rice mart query" />
  32. <request_param galaxy_name="info" remote_name="info" missing="" />
  33. </request_param_translation>
  34. <uihints minwidth="800"/>
  35. <outputs>
  36. <data name="output" format="tabular" />
  37. </outputs>
  38. <options sanitize="False" refresh="True"/>
  39. </tool>