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/tools/emboss_5/emboss_banana.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 30 lines | 26 code | 4 blank | 0 comment | 0 complexity | 46b46145d6def3adec1a6b360a307d72 MD5 | raw file
 1<tool id="EMBOSS: banana3" name="banana" version="5.0.0">
 2  <description>Bending and curvature plot in B-DNA</description>
 3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
 4  <command>banana -sequence $input1 -outfile $out_file1 -graph none -auto</command>
 5  <inputs>
 6    <param format="data" name="input1" type="data">
 7      <label>On query</label>
 8    </param>
 9  </inputs>
10  <outputs>
11    <data format="txt" name="out_file1" />
12  </outputs>
13  <tests>
14    <test>
15      <param name="input1" value="2.fasta"/>
16      <output name="out_file1" file="emboss_banana_out.txt"/>
17    </test>
18  </tests>
19  <help>
20    You can view the original documentation here_.
21    
22    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/banana.html
23
24------
25
26**Citation**
27
28If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
29  </help>
30</tool>