/tools/emboss_5/emboss_pepwindow.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 28 lines · 23 code · 4 blank · 1 comment · 0 complexity · bc2ec0d937a6268aa0f65ad0e5d41cb2 MD5 · raw file
- <tool id="EMBOSS: pepwindow73" name="pepwindow" version="5.0.0">
- <!-- produces png file -->
- <description>Displays protein hydropathy</description>
- <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
- <command interpreter="perl">emboss_single_outputfile_wrapper.pl pepwindow -sequence $input1 -graph png -goutfile $out_file1 -length $length -auto</command>
- <inputs>
- <param format="data" name="input1" type="data">
- <label>Sequence</label>
- </param>
- <param name="length" size="10" type="text" value="7">
- <label>Window size</label>
- </param>
- </inputs>
- <outputs>
- <data format="png" name="out_file1" />
- </outputs>
- <help>
- You can view the original documentation here_.
-
- .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/pepwindow.html
-
- ------
-
- **Citation**
-
- If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_
- </help>
- </tool>