/tools/emboss_5/emboss_plotcon.xml
https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 28 lines · 23 code · 4 blank · 1 comment · 0 complexity · a326e5409846ae7917a143e801856719 MD5 · raw file
- <tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0">
- <!-- produces png file -->
- <description>Plot quality of conservation of a sequence alignment</description>
- <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
- <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences $input1 -graph png -goutfile $out_file1 -winsize $winsize -auto</command>
- <inputs>
- <param format="data" name="input1" type="data">
- <label>Sequence</label>
- </param>
- <param name="winsize" size="10" type="text" value="4">
- <label>Number of columns to average alignment quality over</label>
- </param>
- </inputs>
- <outputs>
- <data format="png" name="out_file1" />
- </outputs>
- <help>
- You can view the original documentation here_.
-
- .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html
-
- ------
-
- **Citation**
-
- If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_
- </help>
- </tool>