/tools/emboss_5/emboss_plotcon.xml
XML | 28 lines | 23 code | 4 blank | 1 comment | 0 complexity | a326e5409846ae7917a143e801856719 MD5 | raw file
1<tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0">
2 <!-- produces png file -->
3 <description>Plot quality of conservation of a sequence alignment</description>
4 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
5 <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences $input1 -graph png -goutfile $out_file1 -winsize $winsize -auto</command>
6 <inputs>
7 <param format="data" name="input1" type="data">
8 <label>Sequence</label>
9 </param>
10 <param name="winsize" size="10" type="text" value="4">
11 <label>Number of columns to average alignment quality over</label>
12 </param>
13 </inputs>
14 <outputs>
15 <data format="png" name="out_file1" />
16 </outputs>
17 <help>
18 You can view the original documentation here_.
19
20 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html
21
22------
23
24**Citation**
25
26If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_
27 </help>
28</tool>