/tools/emboss_5/emboss_multiple_outputfile_wrapper.pl

https://bitbucket.org/cistrome/cistrome-harvard/ · Perl · 19 lines · 17 code · 1 blank · 1 comment · 1 complexity · 9ff91446ece3e4b865fbabc3a401e3f5 MD5 · raw file 

    

  1. #! /usr/bin/perl -w
    2. 

  2. use strict;
    3. 

  3. 

  4. my $cmd_string = join (" ",@ARGV);
    5. 

  5. my $results = `$cmd_string`;
    6. 

  6. my @files = split("\n",$results);
    7. 

  7. foreach my $thisLine (@files)
    8. 

  8. {
    9. 

  9. 	if ($thisLine =~ /Created /)
    10. 

  10. 	{
    11. 

  11. 		$thisLine =~ /[\w|\.]+$/;
    12. 

  12. 		$thisLine =$&;
    13. 

  13. 		print "outfile: $thisLine\n";
    14. 

  14. 	}
    15. 

  15. 	else
    16. 

  16. 	{
    17. 

  17. 		print $thisLine,"\n";
    18. 

  18. 	}
    19. 

  19. }
    20.