/tools/emboss_5/emboss_noreturn.xml

https://bitbucket.org/cistrome/cistrome-harvard/ · XML · 37 lines · 33 code · 4 blank · 0 comment · 0 complexity · 2e0fce1b49fce3d5d2aac5e8e6b4fa13 MD5 · raw file

  1. <tool id="EMBOSS: noreturn60" name="noreturn" version="5.0.0">
  2. <description>Removes carriage return from ASCII files</description>
  3. <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
  4. <command>noreturn -infile $input1 -outfile $out_file1 -system $system -auto</command>
  5. <inputs>
  6. <param format="data" name="input1" type="data">
  7. <label>On query</label>
  8. </param>
  9. <param name="system" type="select">
  10. <label>Target operating system for end-of-line format</label>
  11. <option value="unix">Unix/Linux systems</option>
  12. <option value="pc">Windows/DOS</option>
  13. <option value="mac">Apple Macintosh</option>
  14. </param>
  15. </inputs>
  16. <outputs>
  17. <data format="noreturn" name="out_file1" />
  18. </outputs>
  19. <tests>
  20. <test>
  21. <param name="input1" value="2.fasta"/>
  22. <param name="system" value="unix"/>
  23. <output name="out_file1" file="emboss_noreturn_out.noreturn"/>
  24. </test>
  25. </tests>
  26. <help>
  27. You can view the original documentation here_.
  28. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/noreturn.html
  29. ------
  30. **Citation**
  31. If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
  32. </help>
  33. </tool>