/tools/emboss_5/emboss_noreturn.xml

 1<tool id="EMBOSS: noreturn60" name="noreturn" version="5.0.0">
 2  <description>Removes carriage return from ASCII files</description>
 3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
 4  <command>noreturn -infile $input1 -outfile $out_file1 -system $system -auto</command>
 5  <inputs>
 6    <param format="data" name="input1" type="data">
 7      <label>On query</label>
 8    </param>
 9    <param name="system" type="select">
10      <label>Target operating system for end-of-line format</label>
11      <option value="unix">Unix/Linux systems</option>
12      <option value="pc">Windows/DOS</option>
13      <option value="mac">Apple Macintosh</option>
14    </param>
15  </inputs>
16  <outputs>
17    <data format="noreturn" name="out_file1" />
18  </outputs>
19  <tests>
20    <test>
21      <param name="input1" value="2.fasta"/>
22      <param name="system" value="unix"/>
23      <output name="out_file1" file="emboss_noreturn_out.noreturn"/>
24    </test>
25  </tests>
26  <help>
27    You can view the original documentation here_.
28    
29    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/noreturn.html
30
31------
32
33**Citation**
34
35If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
36  </help>
37</tool>