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/tools/emboss_5/emboss_cirdna.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 29 lines | 20 code | 4 blank | 5 comment | 0 complexity | 307adda49b0858e97d17ef5d3bdb5b05 MD5 | raw file
 1<tool id="EMBOSS: cirdna11" name="cirdna" version="5.0.0">
 2  <description>Draws circular maps of DNA constructs</description>
 3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
 4  <command interpreter="perl">emboss_single_outputfile_wrapper.pl cirdna -infile $input1 -graphout png -goutfile $out_file1 -auto</command>
 5  <inputs>
 6    <param format="data" name="input1" type="data">
 7      <label>On query</label>
 8    </param>
 9  </inputs>
10  <outputs>
11    <data format="png" name="out_file1" />
12  </outputs>
13  <!--    <tests>
14    <test>
15         puts name of file into the png
16    </test>
17  </tests> -->
18  <help>
19    You can view the original documentation here_.
20    
21    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cirdna.html
22
23------
24
25**Citation**
26
27If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
28  </help>
29</tool>