/tools/emboss_5/emboss_banana.pl

 1#! /usr/bin/perl -w
 2use strict;
 3
 4my $cmd_string = join (" ",@ARGV);
 5#my $cmd_string = "/home/djb396/temp/emboss/bin/banana -sequence /home/djb396/universe-prototype/test.fasta -outfile result.txt -graph png -goutfile results -auto";
 6my $results = `$cmd_string`;
 7my @files = split("\n",$results);
 8foreach my $thisLine (@files)
 9{
10	if ($thisLine =~ /Created /i)
11	{
12		$thisLine =~ /[\w|\.]+$/;
13		$thisLine =$&;
14		print "outfile: $thisLine\n";
15	}
16}