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/tools/data_destination/epigraph.xml

https://bitbucket.org/cistrome/cistrome-harvard/
XML | 41 lines | 27 code | 14 blank | 0 comment | 0 complexity | f44066c56b39ba638d02938cdfde98bd MD5 | raw file
 1<?xml version="1.0"?>
 2<tool name="Perform genome analysis" id="epigraph_export">
 3    <description> and prediction with EpiGRAPH</description>
 4    <redirect_url_params>GENOME=${input1.dbkey} NAME=${input1.name} INFO=${input1.info}</redirect_url_params>
 5    <inputs>
 6        <param format="bed" name="input1" type="data" label="Send this dataset to EpiGRAPH">
 7            <validator type="unspecified_build" />
 8        </param>
 9        <param name="REDIRECT_URL" type="hidden" value="http://epigraph.mpi-inf.mpg.de/WebGRAPH/faces/DataImport.jsp" />
10        <param name="DATA_URL" type="baseurl" value="/datasets" />
11        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=epigraph_import" />
12    </inputs>
13    <outputs/>
14    <help>
15
16.. class:: warningmark
17
18After clicking the **Execute** button, you will be redirected to the EpiGRAPH website. Please be patient while the dataset is being imported. Inside EpiGRAPH, buttons are available to send the results of the EpiGRAPH analysis back to Galaxy. In addition, you can always abandon an EpiGRAPH session and return to Galaxy by directing your browser to your current Galaxy instance.
19
20-----
21
22.. class:: infomark
23
24**What it does**
25
26This tool sends the selected dataset to EpiGRAPH in order to perform an in-depth analysis with statistical and machine learning methods.
27
28-----
29
30.. class:: infomark
31
32**EpiGRAPH outline**
33
34The EpiGRAPH_ web service enables biologists to uncover hidden associations in vertebrate genome and epigenome datasets. Users can upload or import sets of genomic regions and EpiGRAPH will test a wide range of attributes (including DNA sequence and structure, gene density, chromatin modifications and evolutionary conservation) for enrichment or depletion among these regions. Furthermore, EpiGRAPH learns to predictively identify genomic regions that exhibit similar properties.
35
36.. _EpiGRAPH: http://epigraph.mpi-inf.mpg.de/
37
38    </help>
39</tool>
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