/tools/rgenetics/rgLDIndep_code.py
https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 25 lines · 16 code · 7 blank · 2 comment · 0 complexity · 696aedb95dd6d1280c945831df2472df MD5 · raw file
- from galaxy import app
- import os, string, time
-
- def timenow():
- """return current time as a string
- """
- return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time()))
-
-
-
- def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):
- name,data = out_data.items()[0]
- basename = param_dict['title1']
- killme = string.punctuation + string.whitespace
- trantab = string.maketrans(killme,'_'*len(killme))
- title = basename.encode().translate(trantab)
- info = '%s filtered by rgLDIndep.py at %s' % (title,timenow())
- data.file_name = data.file_name
- data.metadata.base_name = title
- data.name = '%s.pbed' % title
- data.info = info
- app.model.context.flush()