/tools/rgenetics/rgLDIndep_code.py

https://bitbucket.org/cistrome/cistrome-harvard/ · Python · 25 lines · 16 code · 7 blank · 2 comment · 0 complexity · 696aedb95dd6d1280c945831df2472df MD5 · raw file

  1. from galaxy import app
  2. import os, string, time
  3. def timenow():
  4. """return current time as a string
  5. """
  6. return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time()))
  7. def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):
  8. name,data = out_data.items()[0]
  9. basename = param_dict['title1']
  10. killme = string.punctuation + string.whitespace
  11. trantab = string.maketrans(killme,'_'*len(killme))
  12. title = basename.encode().translate(trantab)
  13. info = '%s filtered by rgLDIndep.py at %s' % (title,timenow())
  14. data.file_name = data.file_name
  15. data.metadata.base_name = title
  16. data.name = '%s.pbed' % title
  17. data.info = info
  18. app.model.context.flush()