/mfp_igor_scripts/h5export.py

 1import h5py
 2import numpy
 3import os
 4import sys
 5
 6h5file=os.path.realpath(sys.argv[-1])
 7h5dir=os.path.dirname(h5file)
 8
 9f=h5py.File(h5file)
10
11exportdir=os.path.join(h5dir,'exported')
12try:
13	os.mkdir(exportdir)
14except:
15	print 'mkdir error, maybe the export directory already exists?'
16
17def h5exportfunc(name):
18	Deflname=name
19     	if Deflname.endswith('Defl'):	   #search for _Defl dataset		
20        	LVDTname=str.replace(Deflname,'Defl','LVDT')  #and correspondant LVDT dataset
21		Defldata=f[Deflname][:]   #store the data in local var
22	  	LVDTdata=f[LVDTname][:]
23		#find useful attr (springc)
24	  	try:
25			notes=f[Deflname].attrs['IGORWaveNote']
26	  		springmatch=notes.index("SpringConstant: ")+len("SpringConstant: ")
27	  		springc=notes[springmatch:].split("\r",1)[0]  #probably extracting the leading numbers can be way more elegant than this
28	  		print Deflname	
29	  	except:
30			print 'Something bad happened with '+Deflname+', ignoring it'
31			return None
32			#returning anything but None halts the visit procedure
33		
34		fp=open(os.path.join(exportdir,name.replace('/',''))+'.txt','w')  
35		#uses the full HDF5 path (slashes out) to avoid potential overwriting		  
36	  	#write attr
37		fp.writelines("IGP-HDF5-Hooke\n")
38		fp.writelines('SpringConstant: '+springc+'\n\n')
39		fp.writelines('App x\tApp y\tRet x\tRet y\n')
40		#write LVDT and Defl data
41		half=Defldata.size/2
42		for i in numpy.arange(0,half):
43			fp.writelines(str(LVDTdata[i])+'\t'+str(Defldata[i])+'\t'+str(LVDTdata[i+half])+'\t'+str(Defldata[i+half])+'\n')	
44		#close the file
45		fp.close()
46		return None
47
48
49f.visit(h5exportfunc)