/config/python-libs.yaml
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- ---
- # Configuration file defining python specific libraries on pypi to install
- # using easy install
- pypi:
- # infrastructure
- - amqplib
- - BeautifulSoup
- - boto
- - distribute
- - fabric
- - ipython
- - Logbook
- - lxml
- - mako
- - nose
- - numpy
- - paste
- - pastescript
- - pycrypto
- - python-cjson
- - pyOpenSSL
- - pyyaml
- - routes
- - simplejson
- - sphinx
- - StarCluster
- - webhelpers
- - webob
- - xlrd
- - yolk
- # build
- - cython
- - Pyrex
- - virtualenv
- # concurrency/web
- - pyzmq
- - tornado
- - Twisted
- # science
- - biopython
- - bcbio-nextgen
- - cutadapt
- - ruffus
- #- cogent
- - DendroPy
- - HTSeq
- - matplotlib
- - networkx
- - pandas
- - pybedtools
- - pygr
- - pysam
- - PyVCF
- - rpy2
- - rpy2-bioconductor-extensions
- - scikit-learn
- - statsmodels
- - ramp
- - scipy
- # databases
- - CouchDB
- - h5py
- - MySQL-python
- - pymongo
- - pysqlite
- - psycopg2
- - SQLAlchemy
- # visualization
- - gnuplot-py
- - PIL
- - pydot
- - pygooglechart
- - reportlab
- # cloudman
- - oca
- - hoover
- - Mako
- ## compile problems
- #- tables
- #- pygraphviz
- #- pysparse
- #- sympy