/test-data/emboss_compseq_out.compseq

https://bitbucket.org/ialbert/galaxy-genetrack · Unknown · 34 lines · 30 code · 4 blank · 0 comment · 0 complexity · f216259caf5fea6ecd08c5cc6d44639e MD5 · raw file 

    

  1. #
    2. 

  2. # Output from 'compseq'
    3. 

  3. #
    4. 

  4. # The Expected frequencies are calculated on the (false) assumption that every
    5. 

  5. # word has equal frequency.
    6. 

  6. #
    7. 

  7. # The input sequences are:
    8. 

  8. #	Sequence
    9. 

  9. 

  10. 

  11. Word size	2
    12. 

  12. Total count	560
    13. 

  13. 

  14. #
    15. 

  15. # Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency
    16. 

  16. #
    17. 

  17. AA	40		0.0714286	0.0625000	1.1428571
    18. 

  18. AC	27		0.0482143	0.0625000	0.7714286
    19. 

  19. AG	26		0.0464286	0.0625000	0.7428571
    20. 

  20. AT	41		0.0732143	0.0625000	1.1714286
    21. 

  21. CA	26		0.0464286	0.0625000	0.7428571
    22. 

  22. CC	24		0.0428571	0.0625000	0.6857143
    23. 

  23. CG	15		0.0267857	0.0625000	0.4285714
    24. 

  24. CT	41		0.0732143	0.0625000	1.1714286
    25. 

  25. GA	19		0.0339286	0.0625000	0.5428571
    26. 

  26. GC	17		0.0303571	0.0625000	0.4857143
    27. 

  27. GG	19		0.0339286	0.0625000	0.5428571
    28. 

  28. GT	43		0.0767857	0.0625000	1.2285714
    29. 

  29. TA	50		0.0892857	0.0625000	1.4285714
    30. 

  30. TC	38		0.0678571	0.0625000	1.0857143
    31. 

  31. TG	37		0.0660714	0.0625000	1.0571429
    32. 

  32. TT	97		0.1732143	0.0625000	2.7714286
    33. 

  33. 

  34. Other	0		0.0000000	0.0000000	10000000000.0000000
    35.