"""

# after running the qc, need to rename various output files

       <data format="html" name="html_file" />

       <data format="txt" name="log_file" parent="html_file" />

       <data format="tabular" name="marker_file" parent="html_file" />

       <data format="tabular" name="subject_file" parent="html_file" />

       <data format="tabular" name="freq_file" parent="html_file" />

   </outputs>

"""

from galaxy import datatypes,model 

import sys,time



def timenow():

    """return current time as a string

    """

    return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time()))





def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):

    """Change data file names



    """

    job_name = param_dict.get( 'out_prefix', 'rgQCdefault' )

    html = ['html','%s.html' % job_name]

    lookup={}

    lookup['html_file'] = html

    info = '%s QC report by rgQC at %s' % (job_name,timenow())

    for aname in lookup.keys():

       data = out_data[aname]

       data_type,newname = lookup[aname]

       data = app.datatypes_registry.change_datatype(data, data_type)

       data.name = newname

       data.info = info

       out_data[aname] = data

    app.model.context.flush()