/tools/emboss_5/emboss_wordcount.xml
https://bitbucket.org/h_morita_dbcls/galaxy-central · XML · 34 lines · 29 code · 5 blank · 0 comment · 0 complexity · 0710733e4b4eeb8cb67fc3ea3749fb20 MD5 · raw file
- <tool id="EMBOSS: wordcount109" name="wordcount" version="5.0.0">
- <description>Counts words of a specified size in a DNA sequence</description>
- <command>wordcount -sequence $input1 -outfile $out_file1 -wordsize "$wordsize" -auto</command>
- <inputs>
- <param format="fasta" name="input1" type="data">
- <label>Sequence</label>
- </param>
- <param name="wordsize" size="5" type="text" value="4">
- <label>Word size</label>
- </param>
- </inputs>
- <outputs>
- <data format="wordcount" name="out_file1" />
- </outputs>
- <tests>
- <test>
- <param name="input1" value="2.fasta"/>
- <param name="wordsize" value="4"/>
- <output name="out_file1" file="emboss_wordcount_out.wordcount"/>
- </test>
- </tests>
- <help>
- .. class:: warningmark
- The input dataset needs to be sequences.
- -----
- You can view the original documentation here_.
-
- .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wordcount.html
- </help>
- </tool>