/tools/emboss_5/emboss_primersearch.xml
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1<tool id="EMBOSS: primersearch81" name="primersearch" version="5.0.0"> 2 <description>Searches DNA sequences for matches with primer pairs</description> 3 <command>primersearch -seqall $input1 -infile $input2 -outfile $out_file1 -mismatchpercent $mismatchpercent -auto</command> 4 <inputs> 5 <param format="fasta" name="input1" type="data"> 6 <label>Main sequences</label> 7 </param> 8 <param format="data" name="input2" type="data"> 9 <label>Primer file</label> 10 </param> 11 <param name="mismatchpercent" size="4" type="text" value="0"> 12 <label>Allowed percent mismatch</label> 13 </param> 14 </inputs> 15 <outputs> 16 <data format="primersearch" name="out_file1" /> 17 </outputs> 18 <tests> 19 <test> 20 <param name="input1" value="2.fasta"/> 21 <param name="input2" value="emboss_primersearch.fasta"/> 22 <param name="mismatchpercent" value="0"/> 23 <output name="out_file1" file="emboss_primersearch_out.primersearch"/> 24 </test> 25 </tests> 26 <help> 27 28 You can view the original documentation here_. 29 30 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/primersearch.html 31 </help> 32</tool>