/tools/emboss_5/emboss_freak.xml

https://bitbucket.org/h_morita_dbcls/galaxy-central · XML · 35 lines · 34 code · 1 blank · 0 comment · 0 complexity · 1ef1dc160547508d2b06051b6d8302ac MD5 · raw file

  1. <tool id="EMBOSS: freak36" name="freak" version="5.0.0">
  2. <description>Residue/base frequency table or plot</description>
  3. <command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -graph png -step $step -auto</command>
  4. <inputs>
  5. <param format="data" name="input1" type="data">
  6. <label>Sequences</label>
  7. </param>
  8. <param name="letters" size="5" type="text" value="gc">
  9. <label>Residue letters</label>
  10. </param>
  11. <param name="step" size="5" type="text" value="1">
  12. <label>Stepping value</label>
  13. </param>
  14. <param name="window" size="5" type="text" value="30">
  15. <label>Averaging window</label>
  16. </param>
  17. </inputs>
  18. <outputs>
  19. <data format="freak" name="out_file1" />
  20. </outputs>
  21. <tests>
  22. <test>
  23. <param name="input1" value="2.fasta"/>
  24. <param name="letters" value="gc"/>
  25. <param name="step" value="1"/>
  26. <param name="window" value="30"/>
  27. <output name="out_file1" file="emboss_freak_out.freak"/>
  28. </test>
  29. </tests>
  30. <help>
  31. You can view the original documentation here_.
  32. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/freak.html
  33. </help>
  34. </tool>