/tools/emboss_5/emboss_freak.xml
XML | 35 lines | 34 code | 1 blank | 0 comment | 0 complexity | 1ef1dc160547508d2b06051b6d8302ac MD5 | raw file
1<tool id="EMBOSS: freak36" name="freak" version="5.0.0"> 2 <description>Residue/base frequency table or plot</description> 3 <command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -graph png -step $step -auto</command> 4 <inputs> 5 <param format="data" name="input1" type="data"> 6 <label>Sequences</label> 7 </param> 8 <param name="letters" size="5" type="text" value="gc"> 9 <label>Residue letters</label> 10 </param> 11 <param name="step" size="5" type="text" value="1"> 12 <label>Stepping value</label> 13 </param> 14 <param name="window" size="5" type="text" value="30"> 15 <label>Averaging window</label> 16 </param> 17 </inputs> 18 <outputs> 19 <data format="freak" name="out_file1" /> 20 </outputs> 21 <tests> 22 <test> 23 <param name="input1" value="2.fasta"/> 24 <param name="letters" value="gc"/> 25 <param name="step" value="1"/> 26 <param name="window" value="30"/> 27 <output name="out_file1" file="emboss_freak_out.freak"/> 28 </test> 29 </tests> 30 <help> 31 You can view the original documentation here_. 32 33 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/freak.html 34 </help> 35</tool>