/tools/emboss_5/emboss_freak.xml
https://bitbucket.org/h_morita_dbcls/galaxy-central · XML · 35 lines · 34 code · 1 blank · 0 comment · 0 complexity · 1ef1dc160547508d2b06051b6d8302ac MD5 · raw file
- <tool id="EMBOSS: freak36" name="freak" version="5.0.0">
- <description>Residue/base frequency table or plot</description>
- <command>freak -seqall $input1 -outfile $out_file1 -window $window -letters $letters -graph png -step $step -auto</command>
- <inputs>
- <param format="data" name="input1" type="data">
- <label>Sequences</label>
- </param>
- <param name="letters" size="5" type="text" value="gc">
- <label>Residue letters</label>
- </param>
- <param name="step" size="5" type="text" value="1">
- <label>Stepping value</label>
- </param>
- <param name="window" size="5" type="text" value="30">
- <label>Averaging window</label>
- </param>
- </inputs>
- <outputs>
- <data format="freak" name="out_file1" />
- </outputs>
- <tests>
- <test>
- <param name="input1" value="2.fasta"/>
- <param name="letters" value="gc"/>
- <param name="step" value="1"/>
- <param name="window" value="30"/>
- <output name="out_file1" file="emboss_freak_out.freak"/>
- </test>
- </tests>
- <help>
- You can view the original documentation here_.
-
- .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/freak.html
- </help>
- </tool>