/lib/galaxy/datatypes/indexers/interval.xml

https://bitbucket.org/h_morita_dbcls/galaxy-central · XML · 14 lines · 13 code · 0 blank · 1 comment · 0 complexity · 4a710f485b0c90ae9d9483143670668f MD5 · raw file 

    

  1. <tool id="INDEXER_Interval_0" name="Index Interval for Track Viewer">
    2. 

  2.   <!-- Used internally to generate track indexes -->
    3. 

  3.   <command interpreter="python">interval.py $input_dataset 
    4. 

  4.     -1 ${input_dataset.metadata.chromCol},${input_dataset.metadata.startCol},${input_dataset.metadata.endCol},${input_dataset.metadata.strandCol}
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  5.     $store_path 2&gt;&amp;1
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  6.   </command>
    7. 

  7.   <inputs>
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  8.     <page>
    9. 

  9.       <param format="interval" name="input_dataset" type="data" label="Choose intervals"/>
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  10.     </page>
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  11.    </inputs>
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  12.   <help>
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  13.   </help>
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  14. </tool>
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