/EMORY_globus_dnaComplete_optimized_bk/pymodules/python2.7/lib/python/Cython/Utils.py

#
#   Cython -- Things that don't belong
#            anywhere else in particular
#

from __future__ import absolute_import

try:
    from __builtin__ import basestring
except ImportError:
    basestring = str

import os
import sys
import re
import io
import codecs
from contextlib import contextmanager

modification_time = os.path.getmtime


def cached_function(f):
    cache = {}
    uncomputed = object()
    def wrapper(*args):
        res = cache.get(args, uncomputed)
        if res is uncomputed:
            res = cache[args] = f(*args)
        return res
    wrapper.uncached = f
    return wrapper

def cached_method(f):
    cache_name = '__%s_cache' % f.__name__
    def wrapper(self, *args):
        cache = getattr(self, cache_name, None)
        if cache is None:
            cache = {}
            setattr(self, cache_name, cache)
        if args in cache:
            return cache[args]
        res = cache[args] = f(self, *args)
        return res
    return wrapper

def replace_suffix(path, newsuf):
    base, _ = os.path.splitext(path)
    return base + newsuf


def open_new_file(path):
    if os.path.exists(path):
        # Make sure to create a new file here so we can
        # safely hard link the output files.
        os.unlink(path)

    # we use the ISO-8859-1 encoding here because we only write pure
    # ASCII strings or (e.g. for file names) byte encoded strings as
    # Unicode, so we need a direct mapping from the first 256 Unicode
    # characters to a byte sequence, which ISO-8859-1 provides

    # note: can't use io.open() in Py2 as we may be writing str objects
    return codecs.open(path, "w", encoding="ISO-8859-1")


def castrate_file(path, st):
    #  Remove junk contents from an output file after a
    #  failed compilation.
    #  Also sets access and modification times back to
    #  those specified by st (a stat struct).
    try:
        f = open_new_file(path)
    except EnvironmentError:
        pass
    else:
        f.write(
            "#error Do not use this file, it is the result of a failed Cython compilation.\n")
        f.close()
        if st:
            os.utime(path, (st.st_atime, st.st_mtime-1))

def file_newer_than(path, time):
    ftime = modification_time(path)
    return ftime > time

@cached_function
def search_include_directories(dirs, qualified_name, suffix, pos,
                               include=False, sys_path=False):
    # Search the list of include directories for the given
    # file name. If a source file position is given, first
    # searches the directory containing that file. Returns
    # None if not found, but does not report an error.
    # The 'include' option will disable package dereferencing.
    # If 'sys_path' is True, also search sys.path.
    if sys_path:
        dirs = dirs + tuple(sys.path)
    if pos:
        file_desc = pos[0]
        from Cython.Compiler.Scanning import FileSourceDescriptor
        if not isinstance(file_desc, FileSourceDescriptor):
            raise RuntimeError("Only file sources for code supported")
        if include:
            dirs = (os.path.dirname(file_desc.filename),) + dirs
        else:
            dirs = (find_root_package_dir(file_desc.filename),) + dirs

    dotted_filename = qualified_name
    if suffix:
        dotted_filename += suffix
    if not include:
        names = qualified_name.split('.')
        package_names = tuple(names[:-1])
        module_name = names[-1]
        module_filename = module_name + suffix
        package_filename = "__init__" + suffix

    for dir in dirs:
        path = os.path.join(dir, dotted_filename)
        if path_exists(path):
            return path
        if not include:
            package_dir = check_package_dir(dir, package_names)
            if package_dir is not None:
                path = os.path.join(package_dir, module_filename)
                if path_exists(path):
                    return path
                path = os.path.join(dir, package_dir, module_name,
                                    package_filename)
                if path_exists(path):
                    return path
    return None


@cached_function
def find_root_package_dir(file_path):
    dir = os.path.dirname(file_path)
    if file_path == dir:
        return dir
    elif is_package_dir(dir):
        return find_root_package_dir(dir)
    else:
        return dir

@cached_function
def check_package_dir(dir, package_names):
    for dirname in package_names:
        dir = os.path.join(dir, dirname)
        if not is_package_dir(dir):
            return None
    return dir

@cached_function
def is_package_dir(dir_path):
    for filename in ("__init__.py",
                     "__init__.pyc",
                     "__init__.pyx",
                     "__init__.pxd"):
        path = os.path.join(dir_path, filename)
        if path_exists(path):
            return 1

@cached_function
def path_exists(path):
    # try on the filesystem first
    if os.path.exists(path):
        return True
    # figure out if a PEP 302 loader is around
    try:
        loader = __loader__
        # XXX the code below assumes a 'zipimport.zipimporter' instance
        # XXX should be easy to generalize, but too lazy right now to write it
        archive_path = getattr(loader, 'archive', None)
        if archive_path:
            normpath = os.path.normpath(path)
            if normpath.startswith(archive_path):
                arcname = normpath[len(archive_path)+1:]
                try:
                    loader.get_data(arcname)
                    return True
                except IOError:
                    return False
    except NameError:
        pass
    return False

# file name encodings

def decode_filename(filename):
    if isinstance(filename, bytes):
        try:
            filename_encoding = sys.getfilesystemencoding()
            if filename_encoding is None:
                filename_encoding = sys.getdefaultencoding()
            filename = filename.decode(filename_encoding)
        except UnicodeDecodeError:
            pass
    return filename

# support for source file encoding detection

_match_file_encoding = re.compile(u"coding[:=]\s*([-\w.]+)").search


def detect_file_encoding(source_filename):
    f = open_source_file(source_filename, encoding="UTF-8", error_handling='ignore')
    try:
        return detect_opened_file_encoding(f)
    finally:
        f.close()


def detect_opened_file_encoding(f):
    # PEPs 263 and 3120
    # Most of the time the first two lines fall in the first 250 chars,
    # and this bulk read/split is much faster.
    lines = f.read(250).split(u"\n")
    if len(lines) > 1:
        m = _match_file_encoding(lines[0])
        if m:
            return m.group(1)
        elif len(lines) > 2:
            m = _match_file_encoding(lines[1])
            if m:
                return m.group(1)
            else:
                return "UTF-8"
    # Fallback to one-char-at-a-time detection.
    f.seek(0)
    chars = []
    for i in range(2):
        c = f.read(1)
        while c and c != u'\n':
            chars.append(c)
            c = f.read(1)
        encoding = _match_file_encoding(u''.join(chars))
        if encoding:
            return encoding.group(1)
    return "UTF-8"


def skip_bom(f):
    """
    Read past a BOM at the beginning of a source file.
    This could be added to the scanner, but it's *substantially* easier
    to keep it at this level.
    """
    if f.read(1) != u'\uFEFF':
        f.seek(0)


def open_source_file(source_filename, mode="r",
                     encoding=None, error_handling=None):
    if encoding is None:
        # Most of the time the coding is unspecified, so be optimistic that
        # it's UTF-8.
        f = open_source_file(source_filename, encoding="UTF-8", mode=mode, error_handling='ignore')
        encoding = detect_opened_file_encoding(f)
        if encoding == "UTF-8" and error_handling == 'ignore':
            f.seek(0)
            skip_bom(f)
            return f
        else:
            f.close()

    if not os.path.exists(source_filename):
        try:
            loader = __loader__
            if source_filename.startswith(loader.archive):
                return open_source_from_loader(
                    loader, source_filename,
                    encoding, error_handling)
        except (NameError, AttributeError):
            pass

    stream = io.open(source_filename, mode=mode,
                     encoding=encoding, errors=error_handling)
    skip_bom(stream)
    return stream


def open_source_from_loader(loader,
                            source_filename,
                            encoding=None, error_handling=None):
    nrmpath = os.path.normpath(source_filename)
    arcname = nrmpath[len(loader.archive)+1:]
    data = loader.get_data(arcname)
    return io.TextIOWrapper(io.BytesIO(data),
                            encoding=encoding,
                            errors=error_handling)


def str_to_number(value):
    # note: this expects a string as input that was accepted by the
    # parser already, with an optional "-" sign in front
    is_neg = False
    if value[:1] == '-':
        is_neg = True
        value = value[1:]
    if len(value) < 2:
        value = int(value, 0)
    elif value[0] == '0':
        literal_type = value[1]  # 0'o' - 0'b' - 0'x'
        if literal_type in 'xX':
            # hex notation ('0x1AF')
            value = int(value[2:], 16)
        elif literal_type in 'oO':
            # Py3 octal notation ('0o136')
            value = int(value[2:], 8)
        elif literal_type in 'bB':
            # Py3 binary notation ('0b101')
            value = int(value[2:], 2)
        else:
            # Py2 octal notation ('0136')
            value = int(value, 8)
    else:
        value = int(value, 0)
    return -value if is_neg else value


def long_literal(value):
    if isinstance(value, basestring):
        value = str_to_number(value)
    return not -2**31 <= value < 2**31


@cached_function
def get_cython_cache_dir():
    """get the cython cache dir

    Priority:

    1. CYTHON_CACHE_DIR
    2. (OS X): ~/Library/Caches/Cython
       (posix not OS X): XDG_CACHE_HOME/cython if XDG_CACHE_HOME defined
    3. ~/.cython

    """
    if 'CYTHON_CACHE_DIR' in os.environ:
        return os.environ['CYTHON_CACHE_DIR']

    parent = None
    if os.name == 'posix':
        if sys.platform == 'darwin':
            parent = os.path.expanduser('~/Library/Caches')
        else:
            # this could fallback on ~/.cache
            parent = os.environ.get('XDG_CACHE_HOME')

    if parent and os.path.isdir(parent):
        return os.path.join(parent, 'cython')

    # last fallback: ~/.cython
    return os.path.expanduser(os.path.join('~', '.cython'))


@contextmanager
def captured_fd(stream=2, encoding=None):
    pipe_in = t = None
    orig_stream = os.dup(stream)  # keep copy of original stream
    try:
        pipe_in, pipe_out = os.pipe()
        os.dup2(pipe_out, stream)  # replace stream by copy of pipe
        try:
            os.close(pipe_out)  # close original pipe-out stream
            data = []

            def copy():
                try:
                    while True:
                        d = os.read(pipe_in, 1000)
                        if d:
                            data.append(d)
                        else:
                            break
                finally:
                    os.close(pipe_in)

            def get_output():
                output = b''.join(data)
                if encoding:
                    output = output.decode(encoding)
                return output

            from threading import Thread
            t = Thread(target=copy)
            t.daemon = True  # just in case
            t.start()
            yield get_output
        finally:
            os.dup2(orig_stream, stream)  # restore original stream
            if t is not None:
                t.join()
    finally:
        os.close(orig_stream)


def print_bytes(s, end=b'\n', file=sys.stdout, flush=True):
    file.flush()
    try:
        out = file.buffer  # Py3
    except AttributeError:
        out = file         # Py2
    out.write(s)
    if end:
        out.write(end)
    if flush:
        out.flush()

class LazyStr:
    def __init__(self, callback):
        self.callback = callback
    def __str__(self):
        return self.callback()
    def __repr__(self):
        return self.callback()
    def __add__(self, right):
        return self.callback() + right
    def __radd__(self, left):
        return left + self.callback()


# Class decorator that adds a metaclass and recreates the class with it.
# Copied from 'six'.
def add_metaclass(metaclass):
    """Class decorator for creating a class with a metaclass."""
    def wrapper(cls):
        orig_vars = cls.__dict__.copy()
        slots = orig_vars.get('__slots__')
        if slots is not None:
            if isinstance(slots, str):
                slots = [slots]
            for slots_var in slots:
                orig_vars.pop(slots_var)
        orig_vars.pop('__dict__', None)
        orig_vars.pop('__weakref__', None)
        return metaclass(cls.__name__, cls.__bases__, orig_vars)
    return wrapper