/rcdk/man/props.Rd
http://github.com/rajarshi/cdkr · Unknown · 41 lines · 40 code · 1 blank · 0 comment · 0 complexity · 356490c725c85d2480ec9126e4b44b5a MD5 · raw file
- \name{get.tpsa}
- \alias{get.tpsa}
- \alias{get.alogp}
- \alias{get.xlogp}
- \alias{get.volume}
- \title{
- Commonly Used Molecular Descriptors
- }
- \description{
- These methods will return the value for the corresponding
- descriptors. While they can always be evaluated using
- \code{\link{eval.desc}}, they are common enough that separate
- functions are provided.
- }
- \usage{
- get.tpsa(molecule)
- get.alogp(molecule)
- get.xlogp(molecule)
- get.volume(molecule)
- }
- \arguments{
- \item{molecule}{A \code{jObjRef} representing an IAtomContainer object}
- }
- \details{
- It's important to note that ALogP and XLogP assumes that the molecule
- has explicit hydrogens. If the molecule is read from an SD file,
- explicit H's are usually present. On the other hand, if the molecule
- is obtained from a SMILES, explicit hydrogens must be added.
- The molecular volume is calculated using a group contribution method
- rather than the an analytical method. This allows to avoid the use of
- 3D structures.
- }
- \value{
- Single numeric value representing TPSA, ALogP, XLogP or molecular volume.
- }
- \keyword{programming}
- \seealso{
- \code{\link{eval.desc}}
- }
- \author{Rajarshi Guha (\email{rajarshi.guha@gmail.com})}